The Origin and Evolution of the Animal Phyla inferred from Analysis of Multiple-Gene Data. Australia has recently begun an extensive research programme in the genomics of our flora and fauna. The enormous amounts of data that emerge from such research are highly complex, but they hold the key to understanding how biological organisms change over time. Our research will untangle that data to answer fundamental, unanswered questions in modern science: How did the animal groups originate? How are ....The Origin and Evolution of the Animal Phyla inferred from Analysis of Multiple-Gene Data. Australia has recently begun an extensive research programme in the genomics of our flora and fauna. The enormous amounts of data that emerge from such research are highly complex, but they hold the key to understanding how biological organisms change over time. Our research will untangle that data to answer fundamental, unanswered questions in modern science: How did the animal groups originate? How are they related to each other? How is biodiversity changing? The answers to these questions and the new analytical tools we will develop will put Australia firmly on the international "map" of Bioinformatics.Read moreRead less
Structural reorganization of the hymenopteran mitochondrial genome. This study will be the first detailed investigation of the evolution of mt genome reorganization, and as such it will identify the processes that shape the evolution of a molecule widely used to interpret phylogeny. A description of the processes that lead to mt genome reorganization will have a substantial impact on our understanding in two areas of mt biology; (1) the discovery of new molecular phenomena that impact on the or ....Structural reorganization of the hymenopteran mitochondrial genome. This study will be the first detailed investigation of the evolution of mt genome reorganization, and as such it will identify the processes that shape the evolution of a molecule widely used to interpret phylogeny. A description of the processes that lead to mt genome reorganization will have a substantial impact on our understanding in two areas of mt biology; (1) the discovery of new molecular phenomena that impact on the organization and evolution of this genome, and (2) the interpretation of its phylogenetic content. It will establish our research group as a leader in the field of evolutionary genetics. Training of high quality students, with exposure to international researchers, will be a significant component of this program.Read moreRead less
Genetic Basis of Variable Expression of Glycan Xeno-Autoantigens by Cattle. Meat and dairy products from cattle contain sugar structures (glycans) that are not made by humans. These structures can be recognised by the immune system and lead to allergic reactions, inflammation and potentially cancer. These non-human structures are called xeno-autoantigens or XAs. We have discovered individual cattle that do not produce one of these XAs. We will study the gene required to make XA in the XA-free ca ....Genetic Basis of Variable Expression of Glycan Xeno-Autoantigens by Cattle. Meat and dairy products from cattle contain sugar structures (glycans) that are not made by humans. These structures can be recognised by the immune system and lead to allergic reactions, inflammation and potentially cancer. These non-human structures are called xeno-autoantigens or XAs. We have discovered individual cattle that do not produce one of these XAs. We will study the gene required to make XA in the XA-free cattle to find the underlying mutation. The same approach will be used to look for natural XA-free individuals in other food species. This knowledge may enable us to create a test to facilitate the natural breeding of non-GMO, XA-free livestock to benefit Australian primary producers and provide safer food for consumers.Read moreRead less
New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely nove ....New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely novel way to test hypotheses of microsatellite diversity. Our research is inter-disciplinary in that we will bridge the gap between molecular phylogenetics and molecular evolution and in so doing make a major advancement in this emerging field.Read moreRead less
Evolutionary, macroecological and phylogenetic patterns in Australasian freshwater crayfish. This project connects Australian systematists to a worldwide project that involves all of the world's living experts on freshwater crayfish evolution in a coordinated effort to answer some very important evolutionary questions. It involves a group of invertebrate animals that are not only readily recognisable, but which in Australia includes the world's largest and the world's most terrestrial crayfish s ....Evolutionary, macroecological and phylogenetic patterns in Australasian freshwater crayfish. This project connects Australian systematists to a worldwide project that involves all of the world's living experts on freshwater crayfish evolution in a coordinated effort to answer some very important evolutionary questions. It involves a group of invertebrate animals that are not only readily recognisable, but which in Australia includes the world's largest and the world's most terrestrial crayfish species. Information gained from the project will contribute to the management of crayfish biodiversity, identification of threatened species and tools to identify these prominent and important members of Australian freshwater ecosystems.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE200100620
Funder
Australian Research Council
Funding Amount
$424,856.00
Summary
Phenotypic plasticity of reef fish vision in a changing world. This project aims to investigate why fishes have more colour vision channels than any other vertebrate on the planet by studying representatives from the most vibrant ecosystem on earth, the Great Barrier Reef. It is currently not clear how vision is controlled on the molecular level and how this translates to the performance and survival of an animal. Through an innovative approach to understanding colour vision and animal behaviour ....Phenotypic plasticity of reef fish vision in a changing world. This project aims to investigate why fishes have more colour vision channels than any other vertebrate on the planet by studying representatives from the most vibrant ecosystem on earth, the Great Barrier Reef. It is currently not clear how vision is controlled on the molecular level and how this translates to the performance and survival of an animal. Through an innovative approach to understanding colour vision and animal behaviour, this project expects to advance Australia’s leadership in neuroscience and ecology, while also increasing the capacity for international collaborations. Beyond the scientific benefit, it will create public awareness about an endangered ecosystem, inform reef guardianship and may inspire new sensory technology.Read moreRead less
Regressive evolution of eyes in subterranean water beetles of arid-zone Australia: A comparative phylogenetic approach. Reduction or total loss of non-functional characters are common evolutionary phenomena, but little is known of the genetic basis of this regressive evolution. This project will use a phylogenetic framework to investigate the forces responsible for evolution of eyelessness in subterranean water beetles, by studying molecular genetic variation in three key eye developmental genes ....Regressive evolution of eyes in subterranean water beetles of arid-zone Australia: A comparative phylogenetic approach. Reduction or total loss of non-functional characters are common evolutionary phenomena, but little is known of the genetic basis of this regressive evolution. This project will use a phylogenetic framework to investigate the forces responsible for evolution of eyelessness in subterranean water beetles, by studying molecular genetic variation in three key eye developmental genes. The water beetles are explicitly suitable to address the questions due to their numerous independently evolved eyeless species and relatively old age of divergence from surface relatives. The research will provide a major new perspective on regressive evolution and the relationship between gene structure and function.Read moreRead less
Extrinsic Control of Mammalian Germ Cell Delineation. Australia is a leader in the recent exciting breakthroughs in reproduction and development, such as cloning and embryonic stem cell propagation, and understanding how germ cells are specified would help us understand the biology underlying specification and developmental potential of all cells. This research will continue to contribute to maintaining Australia's high reputation in advances in reproductive biology. In addition, a greater under ....Extrinsic Control of Mammalian Germ Cell Delineation. Australia is a leader in the recent exciting breakthroughs in reproduction and development, such as cloning and embryonic stem cell propagation, and understanding how germ cells are specified would help us understand the biology underlying specification and developmental potential of all cells. This research will continue to contribute to maintaining Australia's high reputation in advances in reproductive biology. In addition, a greater understanding of marsupial reproduction is a high priority for Australia in the 21st century, with its current unacceptably high rate of mammalian extinctions, for 'we cannot conserve until we comprehend' (Short, 1985).The results therefore are of great potential benefit to society.
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Analysing and modelling molecular rate variation among nuclear and mitochondrial genomes. My research will have important practical benefits for bioinformaticians and evolutionary biologists, because existing analytical methods will be rigorously tested and new tools will be developed. Australia has a comparatively high concentration of researchers in this field, so my research will foster domestic collaboration and import international expertise. The research will provide important insights int ....Analysing and modelling molecular rate variation among nuclear and mitochondrial genomes. My research will have important practical benefits for bioinformaticians and evolutionary biologists, because existing analytical methods will be rigorously tested and new tools will be developed. Australia has a comparatively high concentration of researchers in this field, so my research will foster domestic collaboration and import international expertise. The research will provide important insights into the rates and patterns of genetic changes associated with domestication, and into variation in evolutionary rates among the primate ancestors of humans. In addition to developing new software, which will be made publicly available, I will develop new evolutionary models to supplement existing software packages. Read moreRead less
Molecular evolution and toxinology of colubrid snake venom toxins. This project proposes to examine the origin and evolution of venom systems in advanced snakes (Caenophidia) focusing on the colubrid radiation comprising the rear-fanged species. Demonstration by us of the presence of a potent postsynaptic neurotoxin in the Durvenoy's secretions of the Asian ratsnake Elaphe radiata, an archetypal non-venomous colubrid species, forced a fundamental rethink of venom evolution. The toxin is homologo ....Molecular evolution and toxinology of colubrid snake venom toxins. This project proposes to examine the origin and evolution of venom systems in advanced snakes (Caenophidia) focusing on the colubrid radiation comprising the rear-fanged species. Demonstration by us of the presence of a potent postsynaptic neurotoxin in the Durvenoy's secretions of the Asian ratsnake Elaphe radiata, an archetypal non-venomous colubrid species, forced a fundamental rethink of venom evolution. The toxin is homologous with the three finger toxins, previously thought unique to elapids, and supports the role of venom as a key evolutionary innovation in the diversification of advanced snakes. This project extends this work to other species and toxin families.Read moreRead less