Involvement of cell coupling in vascular function: Development of a computational model. Gap junctions are intercellular channels which enable the production of coordinated responses in multicellular tissues and organs. Blood vessels are comprised of endothelial cells surrounded by smooth muscle cells and gap junctions exist within and between these layers. The present proposal will determine the fundamental role of gap junctions in regulating blood flow and blood pressure. Our data will enable ....Involvement of cell coupling in vascular function: Development of a computational model. Gap junctions are intercellular channels which enable the production of coordinated responses in multicellular tissues and organs. Blood vessels are comprised of endothelial cells surrounded by smooth muscle cells and gap junctions exist within and between these layers. The present proposal will determine the fundamental role of gap junctions in regulating blood flow and blood pressure. Our data will enable us to develop a computational model of the vascular wall and so predict how changes in electrical properties, as occur during pressure changes, can influence blood flow. Since ageing is accompanied by an increase in blood pressure, our results will contribute to a better understanding of blood flow regulation in our ageing population.Read moreRead less
The Origin and Evolution of the Animal Phyla inferred from Analysis of Multiple-Gene Data. Australia has recently begun an extensive research programme in the genomics of our flora and fauna. The enormous amounts of data that emerge from such research are highly complex, but they hold the key to understanding how biological organisms change over time. Our research will untangle that data to answer fundamental, unanswered questions in modern science: How did the animal groups originate? How are ....The Origin and Evolution of the Animal Phyla inferred from Analysis of Multiple-Gene Data. Australia has recently begun an extensive research programme in the genomics of our flora and fauna. The enormous amounts of data that emerge from such research are highly complex, but they hold the key to understanding how biological organisms change over time. Our research will untangle that data to answer fundamental, unanswered questions in modern science: How did the animal groups originate? How are they related to each other? How is biodiversity changing? The answers to these questions and the new analytical tools we will develop will put Australia firmly on the international "map" of Bioinformatics.Read moreRead less
New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely nove ....New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely novel way to test hypotheses of microsatellite diversity. Our research is inter-disciplinary in that we will bridge the gap between molecular phylogenetics and molecular evolution and in so doing make a major advancement in this emerging field.Read moreRead less
Analysing and modelling molecular rate variation among nuclear and mitochondrial genomes. My research will have important practical benefits for bioinformaticians and evolutionary biologists, because existing analytical methods will be rigorously tested and new tools will be developed. Australia has a comparatively high concentration of researchers in this field, so my research will foster domestic collaboration and import international expertise. The research will provide important insights int ....Analysing and modelling molecular rate variation among nuclear and mitochondrial genomes. My research will have important practical benefits for bioinformaticians and evolutionary biologists, because existing analytical methods will be rigorously tested and new tools will be developed. Australia has a comparatively high concentration of researchers in this field, so my research will foster domestic collaboration and import international expertise. The research will provide important insights into the rates and patterns of genetic changes associated with domestication, and into variation in evolutionary rates among the primate ancestors of humans. In addition to developing new software, which will be made publicly available, I will develop new evolutionary models to supplement existing software packages. Read moreRead less
Suction pipette measurements of mammalian rod photoreceptor recovery following intense bleaching exposures. The aim of this project is to discover the events and processes that prevent retinal photoreceptors from recovering instantaneously following the cessation of exposure to extremely bright illumination. Recordings will be made from single rod photoreceptors cells isolated from the mammalian retina. The work will uncover the relative roles of the 'photoproducts' created when rhodopsin abso ....Suction pipette measurements of mammalian rod photoreceptor recovery following intense bleaching exposures. The aim of this project is to discover the events and processes that prevent retinal photoreceptors from recovering instantaneously following the cessation of exposure to extremely bright illumination. Recordings will be made from single rod photoreceptors cells isolated from the mammalian retina. The work will uncover the relative roles of the 'photoproducts' created when rhodopsin absorbs light: e.g. intermediates such as metarhodopsin and opsin. The molecular knowledge obtained will help us to understand why it is that the visual system recovers so slowly after the eye has experienced very intense light.Read moreRead less
Improving the accuracy of phylogenetic reconstruction by improving models of sequence divergence. Phylogenies describe the relationships among species and provide the essential framework for understanding evolutionary processes. They are an essential tool in the identification of functionally important regions in DNA sequences. An important aspect of identifying phylogenies is measuring how DNA sequences change in time. The proposed research will develop sophisticated, practical models of sequen ....Improving the accuracy of phylogenetic reconstruction by improving models of sequence divergence. Phylogenies describe the relationships among species and provide the essential framework for understanding evolutionary processes. They are an essential tool in the identification of functionally important regions in DNA sequences. An important aspect of identifying phylogenies is measuring how DNA sequences change in time. The proposed research will develop sophisticated, practical models of sequence divergence and make them freely available in open source software. The software and models will positively impact on studies seeking to understand Australian biological diversity. The proposed resolution of the eutherian mammal orders will further significantly impact on utilisation of rodents as a model organism for human biology.Read moreRead less
The first stage of vision: transduction and adaptation in retinal photoreceptors. The project aims to provide a detailed understanding of the molecular steps involved in the first stage of vision - the conversion of light into a neural signal in the rod and cone photoreceptors of the retina. The significance of this is that it will explain the initial events that enable us to see, and will help explain the deficits that occur when the process fails. The outcome will be a comprehensive understand ....The first stage of vision: transduction and adaptation in retinal photoreceptors. The project aims to provide a detailed understanding of the molecular steps involved in the first stage of vision - the conversion of light into a neural signal in the rod and cone photoreceptors of the retina. The significance of this is that it will explain the initial events that enable us to see, and will help explain the deficits that occur when the process fails. The outcome will be a comprehensive understanding of how our photoreceptors respond with extreme sensitivity, yet great rapidity, and over an enormous range of light intensities, thus endowing us with our remarkable sense of vision.Read moreRead less
Old brains, new data - early evolution of structural complexity in the vertebrate head. Of the all the complex structures biology has provided, the evolution of the vertebrate brain and its sensory organs is perhaps the most enigmatic. The fossil record occasionally provides a chance to trace this evolution, but only with the use of novel X-ray scanning techniques can these secrets be detailed in three dimensions. Exploiting the exceptional fossil record from Australia and China, this team will ....Old brains, new data - early evolution of structural complexity in the vertebrate head. Of the all the complex structures biology has provided, the evolution of the vertebrate brain and its sensory organs is perhaps the most enigmatic. The fossil record occasionally provides a chance to trace this evolution, but only with the use of novel X-ray scanning techniques can these secrets be detailed in three dimensions. Exploiting the exceptional fossil record from Australia and China, this team will for the first time collect a vast comparative data base which will yield clues on the early evolution of the ear, eye and brain. Read moreRead less
Origin of jaws - the greatest unsolved mystery of early vertebrate evolution. The 2008 discovery of an unborn embryo in the 380 million-year-old "Mother Fish" from the famous Gogo fossil deposit in NW Australia has attracted a collaboration of Australian, American and Chinese scientists to a new international collaboration. The team will study spectacular new fossils from central Australia and southern China, the oldest known back-boned animals with jaws and a hard skeleton. Innovative 3D X-ray ....Origin of jaws - the greatest unsolved mystery of early vertebrate evolution. The 2008 discovery of an unborn embryo in the 380 million-year-old "Mother Fish" from the famous Gogo fossil deposit in NW Australia has attracted a collaboration of Australian, American and Chinese scientists to a new international collaboration. The team will study spectacular new fossils from central Australia and southern China, the oldest known back-boned animals with jaws and a hard skeleton. Innovative 3D X-ray computer tomography, and the Australian synchrotron, will be used to investigate ancient cells and preserved soft tissue structures, to search for evidence that copulation and internal fertilization, as in modern mammals, might have originated when jaws first evolved. Read moreRead less
ION CHANNELS FORMED BY SMALL PROTEINS FROM VIRUSES. Movements of ions across cell membranes through protein ion channels are essential for normal cell function. We have found that some small proteins from viruses can form ion channels. Studying these simple channels should give us clues about the function of more complex channels, such as those in the brain, as well as giving us information about the viruses themselves. We will test whether a small protein from Ross River virus forms ion channel ....ION CHANNELS FORMED BY SMALL PROTEINS FROM VIRUSES. Movements of ions across cell membranes through protein ion channels are essential for normal cell function. We have found that some small proteins from viruses can form ion channels. Studying these simple channels should give us clues about the function of more complex channels, such as those in the brain, as well as giving us information about the viruses themselves. We will test whether a small protein from Ross River virus forms ion channels and will also test the effects of selected mutations in proteins from influenza and AIDS viruses that we have shown previously to form ion channels.Read moreRead less