Understanding disease resistance gene evolution across the Brassicaceae. Pan genomes represent the diversity of a species, including structural and sequence variation, which cannot be provided by a reference genome alone. In this project we will characterise resistance gene diversity across the Brassicaceae pan genomes. Through comparison with resistance gene diversity in cultivated Brassica species we will understand selection underlying resistance gene evolution in wild species and subsequent ....Understanding disease resistance gene evolution across the Brassicaceae. Pan genomes represent the diversity of a species, including structural and sequence variation, which cannot be provided by a reference genome alone. In this project we will characterise resistance gene diversity across the Brassicaceae pan genomes. Through comparison with resistance gene diversity in cultivated Brassica species we will understand selection underlying resistance gene evolution in wild species and subsequent domestication and breeding. Knowledge on how variation affects disease susceptibility, especially to the devastating fungal pathogen blackleg, and contributes to phenotypic variation, will lead to improved plant protection strategies and increased crop resilience.Read moreRead less
Pathogen recognition and plant-defence activation by a novel Fusarium wilt-resistance protein from tomato. The devastating effects of Fusarium wilt disease of tomato is a threat to one of Australia's most economically important horticultural crops. Resistant tomato varieties offer the most effective means of control but the fundamental mechanisms underlying this resistance are yet to be understood. This research will increase our understanding of resistance to Fusarium wilt disease. The knowledg ....Pathogen recognition and plant-defence activation by a novel Fusarium wilt-resistance protein from tomato. The devastating effects of Fusarium wilt disease of tomato is a threat to one of Australia's most economically important horticultural crops. Resistant tomato varieties offer the most effective means of control but the fundamental mechanisms underlying this resistance are yet to be understood. This research will increase our understanding of resistance to Fusarium wilt disease. The knowledge gained will assist in the development of new robust, sustainable approaches to disease control, as well as the development of pre-emptive strategies to avert major outbreaks, which will ensure reliable productivity and minimal economic losses into the future.Read moreRead less
The More the Merrier? Investigating copy number variation in Brassicas. This project intends to develop an understanding of how gene copy number variation affects disease susceptibility to help in the design of novel plant protection strategies. Gene copy number variants (CNVs) are segments of DNA that have been duplicated or lost in the genome of one individual or line with respect to another. CNVs have been shown to contribute significantly to phenotypic differences in humans, including diseas ....The More the Merrier? Investigating copy number variation in Brassicas. This project intends to develop an understanding of how gene copy number variation affects disease susceptibility to help in the design of novel plant protection strategies. Gene copy number variants (CNVs) are segments of DNA that have been duplicated or lost in the genome of one individual or line with respect to another. CNVs have been shown to contribute significantly to phenotypic differences in humans, including disease susceptibility, and the same seems to apply in plants. This project aims to apply the genome sequences for Brassica species to detect CNVs from re-sequencing data. Knowing how this variation affects an individual or line’s disease susceptibility, especially to the devastating fungal pathogen blackleg, could improve plant protection strategies and crop production.Read moreRead less
Identification of immune receptor and signalling proteins from plants. This project aims to clone a new extracellular pathogen receptor, and map immune signalling pathways downstream of both intra- and extra-cellular receptors using innovative biochemical methods. The plant immune system protects plants and crops from attack by pests and pathogens. It is an innate system based on extracellular and intracellular pathogen receptors. Despite the importance of plant immunity in both biological and a ....Identification of immune receptor and signalling proteins from plants. This project aims to clone a new extracellular pathogen receptor, and map immune signalling pathways downstream of both intra- and extra-cellular receptors using innovative biochemical methods. The plant immune system protects plants and crops from attack by pests and pathogens. It is an innate system based on extracellular and intracellular pathogen receptors. Despite the importance of plant immunity in both biological and agricultural terms, little is known about the identity of such receptors or the signalling events that link pathogen perception to response. The results are expected to enhance crop productivity and provide important insights into the architecture of the plant immune system.Read moreRead less
Expression profiling of giant cells induced in host plant roots by root-knot nematodes. Root-knot nematodes cause crop losses of over $400 million per annum in Australia. Control by toxic chemical nematicodes is expensive and can pollute groundwater. Benefits from this research for the Australian community are: (i) it will ensure that Australian researchers stay at the forefront of research in plant nematology, (ii) it provides significant local and international linkages that will stimulate res ....Expression profiling of giant cells induced in host plant roots by root-knot nematodes. Root-knot nematodes cause crop losses of over $400 million per annum in Australia. Control by toxic chemical nematicodes is expensive and can pollute groundwater. Benefits from this research for the Australian community are: (i) it will ensure that Australian researchers stay at the forefront of research in plant nematology, (ii) it provides significant local and international linkages that will stimulate research outputs, and (iii) new knowledge will be generated on how plants respond to attack by nematodes - this will generate new intellectual property, leading to better control methods and reduced costs that will support rural communities, and reduce environmental pollution.Read moreRead less
A systems approach to dissect the pathogenicity and host specificity of the Fusarium wilt pathogen, Fusarium oxysporum. The pathogenic fungus Fusarium oxysporum causes wilt disease in many plant species, including many that are important for Australian agriculture. Developing environmentally friendly disease protection strategies against this pathogen requires a clear understanding of infection strategies used by the fungus to invade its host. This project, along with a parallel project in host ....A systems approach to dissect the pathogenicity and host specificity of the Fusarium wilt pathogen, Fusarium oxysporum. The pathogenic fungus Fusarium oxysporum causes wilt disease in many plant species, including many that are important for Australian agriculture. Developing environmentally friendly disease protection strategies against this pathogen requires a clear understanding of infection strategies used by the fungus to invade its host. This project, along with a parallel project in host resistance mechanisms, will provide the basis for development of a world leading platform in mechanisms of fungal pathogenicity and virulence and plant disease resistance/susceptibility. Application of the knowledge gained in this project to other host-pathogen interactions will thereby provide opportunities for improved crop protection and biosecurity.Read moreRead less
Molecular characterisation of the Prf bacterial recognition complex of tomato. This project will investigate the composition and function of a large protein complex in tomatoes that controls their ability to resist attack by bacteria. The results will provide understanding to how all plants resist all diseases, and may help to improve environmentally-benign disease resistance in crop species.