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Devising sophisticated computational comparative genomic analysis strategies for animal and plant genomes. Given the significance of comparative genomic analysis, this research proposal brings together Australian scientists with a track record in comparative genomic analysis, bioinformatics, molecular biology and statistics to work on consolidating a computational framework for comparative genomic analysis and investigating transcriptome data by capitalising on international collaborations and i ....Devising sophisticated computational comparative genomic analysis strategies for animal and plant genomes. Given the significance of comparative genomic analysis, this research proposal brings together Australian scientists with a track record in comparative genomic analysis, bioinformatics, molecular biology and statistics to work on consolidating a computational framework for comparative genomic analysis and investigating transcriptome data by capitalising on international collaborations and involvement. The outcomes of this research will be of benefit to the national community through technology transfer (such as the identification of novel and functional genomic non-coding sequences), training (in bioinformatics related activities) and national coordination (of bioinformatics activities).Read moreRead less
Re-balancing global resources: Manipulating toxic prussic acid (dhurrin) to improve nitrogen use efficiency in forage sorghum in a changing climate. Sorghum is grown widely is Australia and world-wide for forage, grain (mostly for animal feed) and biofuels. It grows well in dry areas. The problem is that the leaves contain a toxin that releases prussic acid (cyanide) that can reduce animal production or even kill stock feeding on it, especially when water stressed. The problem will get worse wit ....Re-balancing global resources: Manipulating toxic prussic acid (dhurrin) to improve nitrogen use efficiency in forage sorghum in a changing climate. Sorghum is grown widely is Australia and world-wide for forage, grain (mostly for animal feed) and biofuels. It grows well in dry areas. The problem is that the leaves contain a toxin that releases prussic acid (cyanide) that can reduce animal production or even kill stock feeding on it, especially when water stressed. The problem will get worse with climate change. Low-cyanide plants developed by us using non-GM methods grow fast, but accumulate nitrate instead which is also toxic. This is a waste of expensive fertiliser too. We aim to develop plants that divert resources to growth instead of toxins in order to reduce fertiliser use and help prepare for the future. The fast growing plants may also be useful as a biofuel crop.Read moreRead less
Biology of flowering plant male gametic cells in relation to fertilization. The world food supply is primarily dependent on plants. The continuation of an adequate food supply depends upon the success of fertilization that involves the fusion of the sperm cell with the egg cell. The entire process of fertilization can be manipulated once the specific molecules involved in its regulation have been identified. This project deals with the discovery of male gamete biomolecules involved in fertili ....Biology of flowering plant male gametic cells in relation to fertilization. The world food supply is primarily dependent on plants. The continuation of an adequate food supply depends upon the success of fertilization that involves the fusion of the sperm cell with the egg cell. The entire process of fertilization can be manipulated once the specific molecules involved in its regulation have been identified. This project deals with the discovery of male gamete biomolecules involved in fertilization. The knowledge obtained will have potential applications in developing novel breeding technologies for improved crop plants.Read moreRead less
New Enantiomeric Separation Technologies for Natural Product, Pharmaceuticals and Environmental Pollutant Characterisation. Enantiomeric characterisation allows evaluation of drug purity for potentially harmful constituents, consumer protection against adulteration of essential oils and natural materials, and study of chemical interactions in biochemical/environmental systems. Chromatograph technologies (GC, HPLC and CE)for enantioseparation are available, however limitations prevent multicompon ....New Enantiomeric Separation Technologies for Natural Product, Pharmaceuticals and Environmental Pollutant Characterisation. Enantiomeric characterisation allows evaluation of drug purity for potentially harmful constituents, consumer protection against adulteration of essential oils and natural materials, and study of chemical interactions in biochemical/environmental systems. Chromatograph technologies (GC, HPLC and CE)for enantioseparation are available, however limitations prevent multicomponent characterisation of complete sample mixtures. Critical choices involve: choosing a chiral selector that interacts differentially upon all enantiomers; incorporation of selector into high-efficiency chromatographic systems; application to all target compounds in the sample. We will synthesise novel chiral selectors, incorporate these into new separation columns, apply ultra-high resolution 2-dimensional GCxGC to broad-spectrum chiral analysis of volatile chemical samples.Read moreRead less
Circular Plant Proteins with Pharmaceutical Applications. The proposed research will develop methods for using plants as protein production factories. Initially I will use plants to create engineered cyclotides that incorporate peptides with proven therapeutic activity against cancer and multiple sclerosis. Successful production of therapeutic proteins in plants will benefit Australians by making treatments for these and other diseases more accessible. It also has the potential for a major econo ....Circular Plant Proteins with Pharmaceutical Applications. The proposed research will develop methods for using plants as protein production factories. Initially I will use plants to create engineered cyclotides that incorporate peptides with proven therapeutic activity against cancer and multiple sclerosis. Successful production of therapeutic proteins in plants will benefit Australians by making treatments for these and other diseases more accessible. It also has the potential for a major economic benefit from the sales of Australian-based drugs. This proposal will also provide outstanding research training for graduate students in multidisciplinary methods that constitute state-of the-art structural and plant molecular biology.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0668507
Funder
Australian Research Council
Funding Amount
$260,000.00
Summary
Real time PCR and nanoparticle diagnostic facilities for high-throughput quantitative analysis of genomic structure and gene expression. Modern molecular tools have lead to an explosion in genome projects and unification of all areas of biology. The most basic need for such research is access to improving technologies for detecting DNA fingerprints that distinguish genetically-diverse genes, and determining which genes are "switched on" or 'off' in various situations. Real time PCR technology, ....Real time PCR and nanoparticle diagnostic facilities for high-throughput quantitative analysis of genomic structure and gene expression. Modern molecular tools have lead to an explosion in genome projects and unification of all areas of biology. The most basic need for such research is access to improving technologies for detecting DNA fingerprints that distinguish genetically-diverse genes, and determining which genes are "switched on" or 'off' in various situations. Real time PCR technology, pioneered by The University of Queensland (UQ) and Southern Cross University (SCU) using ARC funding in 1996, is now the technology of choice for much of this research. This project will provide high-throughput equipment for real time PCR, and will develop complementary high-throughput "nanoparticle" DNA genotyping technologies, with applications to medicine and agriculture.
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Endosymbiotic DNA transfer. Interorganellar DNA movement is a major force in evolution. In higher organisms, the prokaryotic ancestors of mitochondria and chloroplasts donated many genes to the nucleus. Plants have unique potential in studies of the mechanisms that have driven genome evolution. We established experimentally that DNA moves from the chloroplast to the nucleus at high frequency and this provided us with a world lead in this scientifically new area. The relocated genes contribute to ....Endosymbiotic DNA transfer. Interorganellar DNA movement is a major force in evolution. In higher organisms, the prokaryotic ancestors of mitochondria and chloroplasts donated many genes to the nucleus. Plants have unique potential in studies of the mechanisms that have driven genome evolution. We established experimentally that DNA moves from the chloroplast to the nucleus at high frequency and this provided us with a world lead in this scientifically new area. The relocated genes contribute to the number and diversity of genes and gene function. Genetically manipulated (GM) crops use the chloroplast compartment to make high levels of protein, necessitating a full understanding of how transgenes behave within the cellular and the external environment.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0882866
Funder
Australian Research Council
Funding Amount
$470,000.00
Summary
MALDI Imaging and Protein Analysis Facility for WA. Mass spectrometry as a tool for analytical research can be coupled to imaging of tissues to provide an important bridge between biochemical, cell biology and physiological sciences. These are competitive research areas that need the latest in speed, accuracy and sensitivity. Strategic placement of such infrastructure in locations of research strength is vital to allow hand-on use that promotes excellence, innovation and creative exploration of ....MALDI Imaging and Protein Analysis Facility for WA. Mass spectrometry as a tool for analytical research can be coupled to imaging of tissues to provide an important bridge between biochemical, cell biology and physiological sciences. These are competitive research areas that need the latest in speed, accuracy and sensitivity. Strategic placement of such infrastructure in locations of research strength is vital to allow hand-on use that promotes excellence, innovation and creative exploration of the limits of such tools to answer pressing questions in biology and chemistry. WA students and researchers will gain new opportunities in an arena of MALDI imaging in biological research and intact protein analysis for structural studies.Read moreRead less
Trafficking of DNA between chloroplast and nucleus in higher plants. Reliably high levels of diverse proteins can be produced in plant chloroplasts. Environmental risks are considered low for chloroplast genes because they are not transmitted by pollen. However, we recently discovered that DNA escapes from the tobacco chloroplast to the nucleus with unexpectedly high frequency. The associated environmental risks require immediate investigation. This project will determine the fate of chloroplast ....Trafficking of DNA between chloroplast and nucleus in higher plants. Reliably high levels of diverse proteins can be produced in plant chloroplasts. Environmental risks are considered low for chloroplast genes because they are not transmitted by pollen. However, we recently discovered that DNA escapes from the tobacco chloroplast to the nucleus with unexpectedly high frequency. The associated environmental risks require immediate investigation. This project will determine the fate of chloroplast DNA that has moved to the nuclear genome and gain insight into the evolutionary and environmental consequences of chloroplast DNA escape. The ubiquity of DNA escape also will be studied in an edible crop with a small genome, tomato.Read moreRead less
Chloroplast pigments as developmental signals. This project will define roles of chloroplast pigments in cellular signaling, plant growth and development. Effective communication between the chloroplast and the nucleus is essential for maintaining viability and productivity of the cell. Similarly, long-distance signaling is required for coordinated growth and development and we hypothesise that pigments also have importance in this role. Our proposal brings together the multidisciplinary skills ....Chloroplast pigments as developmental signals. This project will define roles of chloroplast pigments in cellular signaling, plant growth and development. Effective communication between the chloroplast and the nucleus is essential for maintaining viability and productivity of the cell. Similarly, long-distance signaling is required for coordinated growth and development and we hypothesise that pigments also have importance in this role. Our proposal brings together the multidisciplinary skills and resources of six investigators to define how certain carotenoids and chlorophyll precursors regulate gene expression and to determine the identity of what is most likely a carotenoid derivative with hormonal properties that controls lateral branch growth.Read moreRead less