Understanding disease resistance gene evolution across the Brassicaceae. Pan genomes represent the diversity of a species, including structural and sequence variation, which cannot be provided by a reference genome alone. In this project we will characterise resistance gene diversity across the Brassicaceae pan genomes. Through comparison with resistance gene diversity in cultivated Brassica species we will understand selection underlying resistance gene evolution in wild species and subsequent ....Understanding disease resistance gene evolution across the Brassicaceae. Pan genomes represent the diversity of a species, including structural and sequence variation, which cannot be provided by a reference genome alone. In this project we will characterise resistance gene diversity across the Brassicaceae pan genomes. Through comparison with resistance gene diversity in cultivated Brassica species we will understand selection underlying resistance gene evolution in wild species and subsequent domestication and breeding. Knowledge on how variation affects disease susceptibility, especially to the devastating fungal pathogen blackleg, and contributes to phenotypic variation, will lead to improved plant protection strategies and increased crop resilience.Read moreRead less
Building better Brassicas: Understanding disease resistance mechanisms across the Brassicaceae. Brassica species are important crops producing cooking oil, vegetables and biofuel, grown in diverse environments with a high economic and export value. Blackleg disease, caused by the fungus Leptospheria maculans, is the most important disease of brassica crops world-wide. The newly available brassica genome sequence provides the resources to study the co-evolution of this plant and pathogen. This pr ....Building better Brassicas: Understanding disease resistance mechanisms across the Brassicaceae. Brassica species are important crops producing cooking oil, vegetables and biofuel, grown in diverse environments with a high economic and export value. Blackleg disease, caused by the fungus Leptospheria maculans, is the most important disease of brassica crops world-wide. The newly available brassica genome sequence provides the resources to study the co-evolution of this plant and pathogen. This project will characterise the evolution and conservation of resistance genes in wild and cultivated brassicas, using next-generation sequencing technology, to assess their potential for crop improvement. An understanding of the evolution of genes responsible for resistance will lead to improved plant protection strategies for brassica crops.Read moreRead less
Improving heat and drought tolerance in canola through genomic selection in Brassica rapa. This project aims to improve heat and drought tolerance in canola by identifying stress tolerance genes in the genetically diverse turnip family. An effective large-scale screening test for heat and drought tolerance will be developed and a number of heat- and drought-tolerant lines will be identified for genomic breeding and selection.
Revealing novel mechanisms conferring evolution of resistance to glufosinate and glyphosate in Eleusine indica. Glyphosate and its alternative glufosinate are the most important herbicides in world agriculture. The world’s first cases of glufosinate resistance in Eleusine indica have been recently reported. The aims of the proposed research is to identify the currently unknown biochemical and molecular mechanisms conferring glufosinate resistance, to unravel the novel molecular mechanism endowin ....Revealing novel mechanisms conferring evolution of resistance to glufosinate and glyphosate in Eleusine indica. Glyphosate and its alternative glufosinate are the most important herbicides in world agriculture. The world’s first cases of glufosinate resistance in Eleusine indica have been recently reported. The aims of the proposed research is to identify the currently unknown biochemical and molecular mechanisms conferring glufosinate resistance, to unravel the novel molecular mechanism endowing very high level glyphosate resistance, and to elucidate the evolutionary trajectory of glyphosate resistance in E. indica. This will advance our current knowledge and understanding of resistance evolution and have impact on resistance management.Read moreRead less
Combining new synthetic biology tools to boost crop CO2 capture and growth. A solution for improving crop yield is to enhance the carbon dioxide fixation properties of the enzyme Rubisco whose inefficient activity often limits plant growth. This project makes use of new synthetic biology capabilities to artificially evolve Rubisco in the laboratory and select for new versions with improved performance. These beneficial changes will be introduced into crop Rubisco using targeted gene editing appr ....Combining new synthetic biology tools to boost crop CO2 capture and growth. A solution for improving crop yield is to enhance the carbon dioxide fixation properties of the enzyme Rubisco whose inefficient activity often limits plant growth. This project makes use of new synthetic biology capabilities to artificially evolve Rubisco in the laboratory and select for new versions with improved performance. These beneficial changes will be introduced into crop Rubisco using targeted gene editing approaches and the improvements in photosynthesis, growth and yield evaluated. This information will aid complimentary biotechnological efforts seeking to supercharge photosynthesis and help deliver the second Green Revolution needed to meet the improvement required in future agriculture productivity and resource use.Read moreRead less
Investigating a novel genetic strategy for insect resistance in crops. Plants are in a constant battle with insect pests and there is an increasing reliance on chemical inputs for control. However there are incoming bans on some pesticides, and new approaches are required for pest management. The aim of this project is to develop a new strategy which exploits the dependence of herbivorous insects on phytosterols. Here, we will apply the latest genomics technologies in plants to produce non-utili ....Investigating a novel genetic strategy for insect resistance in crops. Plants are in a constant battle with insect pests and there is an increasing reliance on chemical inputs for control. However there are incoming bans on some pesticides, and new approaches are required for pest management. The aim of this project is to develop a new strategy which exploits the dependence of herbivorous insects on phytosterols. Here, we will apply the latest genomics technologies in plants to produce non-utilizable sterols which will not support insect growth and reproduction, but will still allow the plant to function normally. We will demonstrate this in the important crop canola. Translation of this knowledge will support breeding for crop resilience, leading to durable resistance and more sustainable crop production.Read moreRead less
Mid-Career Industry Fellowships - Grant ID: IM230100025
Funder
Australian Research Council
Funding Amount
$747,126.00
Summary
Using the blackleg fungus as a model for maximising fungicide efficacy. Resistance to chemicals impacts the ability to control many diseases across many crops. This project aims to identify key epidemiological factors contributing to fungicide resistance in an emerging model system, blackleg disease of canola, using innovative approaches. The outcomes of this research will be management strategies for minimising the risk of evolution of fungicide resistance, a key industry need. This will also e ....Using the blackleg fungus as a model for maximising fungicide efficacy. Resistance to chemicals impacts the ability to control many diseases across many crops. This project aims to identify key epidemiological factors contributing to fungicide resistance in an emerging model system, blackleg disease of canola, using innovative approaches. The outcomes of this research will be management strategies for minimising the risk of evolution of fungicide resistance, a key industry need. This will also enhance interdisciplinary collaborations through combining field and molecular research. These management strategies will provide significant economic benefits by ensuring increased canola yields, whilst providing health and environmental benefits through minimisation of unnecessary use of fungicides.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE210100398
Funder
Australian Research Council
Funding Amount
$448,365.00
Summary
The Life And Death Of Plant Genes. My recent work has demonstrated that in contrast to animal genes, many plant genes show presence/absence variation within a species, with associated trait variation. In this project, I will explore models of gene birth and death by comparing genomes of Brassicaceae, including the model Arabidopsis and Brassica crop species. By comparing many genomes I will learn how new genes were born. I will build models that predict the likelihood of gene loss based on a gen ....The Life And Death Of Plant Genes. My recent work has demonstrated that in contrast to animal genes, many plant genes show presence/absence variation within a species, with associated trait variation. In this project, I will explore models of gene birth and death by comparing genomes of Brassicaceae, including the model Arabidopsis and Brassica crop species. By comparing many genomes I will learn how new genes were born. I will build models that predict the likelihood of gene loss based on a gene’s physical environment, function, and expression. The project will build on our understanding of plant genetic diversity. Expected outcomes of this research include the identification of key genomic elements in gene birth and loss and support strategies to improve plant cultivars.Read moreRead less
Defining the Brassica pan-genome and establishing methods for gene conversion based crop improvement. Gene content varies between individual varieties. The project aims to apply novel genomic tools to identify and characterise the fixed and variable gene content in the important crop canola and use this to understand genome evolution as well as develop tools to accelerate canola breeding. The project team have developed and used a high-resolution genotyping approach to demonstrate that gene conv ....Defining the Brassica pan-genome and establishing methods for gene conversion based crop improvement. Gene content varies between individual varieties. The project aims to apply novel genomic tools to identify and characterise the fixed and variable gene content in the important crop canola and use this to understand genome evolution as well as develop tools to accelerate canola breeding. The project team have developed and used a high-resolution genotyping approach to demonstrate that gene conversions, short recombination events which lead to the non-reciprocal exchange of genomic regions during meiosis, are abundant in crop genomes. The project aims to develop methods and resources to characterise gene conversion in canola and establish a basis for gene conversion based crop improvement.Read moreRead less
Sterol interference as a new approach to the control of insect pests of crops. This project aims to develop a new approach to control chewing insect pests of crops. This will be achieved by interfering with insect sterol metabolism so that they fail to grow and reproduce normally.