Drosophila Quantitative Genomics. This research proposal will be a key element in the emerging program in evolutionary and ecological functional genomics at the University of Queensland. Our studies utilize modern genomics approaches to address diverse national priorities from conservation of biological resources in the face of climate change, to understanding how genetic history contributes to drug susceptibility. The research will contribute to the intellectual foundation upon which rigorous ....Drosophila Quantitative Genomics. This research proposal will be a key element in the emerging program in evolutionary and ecological functional genomics at the University of Queensland. Our studies utilize modern genomics approaches to address diverse national priorities from conservation of biological resources in the face of climate change, to understanding how genetic history contributes to drug susceptibility. The research will contribute to the intellectual foundation upon which rigorous environmental and biomedical research is built. Social impact will be seen in the training of a new generation of integrative genome biologists, and the shaping of attitudes toward the role of genetics in human biology.Read moreRead less
Wood quality improvement for spotted gum. Eucalypts are one of the world's top sources of hardwood saw and pulp logs. This project will provide a model for accelerated tree improvement for wood quality. The aim is to link genes for wood formation with wood quality phenotypes in spotted gum, a priority hardwood eucalypt for Northern Australia. The significance of the approach is time and costs saved in the deployment of plantations of higher wood quality through the circumvention of delays to gen ....Wood quality improvement for spotted gum. Eucalypts are one of the world's top sources of hardwood saw and pulp logs. This project will provide a model for accelerated tree improvement for wood quality. The aim is to link genes for wood formation with wood quality phenotypes in spotted gum, a priority hardwood eucalypt for Northern Australia. The significance of the approach is time and costs saved in the deployment of plantations of higher wood quality through the circumvention of delays to generate populations required for alternative approaches and early selection available with molecular breeding.Read moreRead less
Using comparative genomics to identify genes responsible for adaptation to environmental toxins. The US National Human Genome Research Institute has committed to sequencing the genomes of ten different Drosophila (fly) species. We will search these genomes, and two others that are already available, for genes that allow flies to cope with environmental toxins found in the plants upon which they feed and breed. These same genes have the potential to degrade many of the insecticides used to con ....Using comparative genomics to identify genes responsible for adaptation to environmental toxins. The US National Human Genome Research Institute has committed to sequencing the genomes of ten different Drosophila (fly) species. We will search these genomes, and two others that are already available, for genes that allow flies to cope with environmental toxins found in the plants upon which they feed and breed. These same genes have the potential to degrade many of the insecticides used to control insect pests. Hence, this research will contribute to ongoing efforts to minimize the threat to agriculture posed by the insecticide resistance that frequently evolves in pest species. Read moreRead less
Why do only some exotics become invasive? Combining ecological and genomic approaches to address alternative hypotheses in a recent Australian weed. This project will specifically test alternative hypotheses about how weeds become invasive. As invasive weeds affect both agricultural and native ecosystems equally, research on understanding the mechanisms of weed invasion is critical. Outcomes will benefit Australia by allowing better prioritisation of management against exotic plants already i ....Why do only some exotics become invasive? Combining ecological and genomic approaches to address alternative hypotheses in a recent Australian weed. This project will specifically test alternative hypotheses about how weeds become invasive. As invasive weeds affect both agricultural and native ecosystems equally, research on understanding the mechanisms of weed invasion is critical. Outcomes will benefit Australia by allowing better prioritisation of management against exotic plants already in the country by providing predictive tools to estimate likelihood of spread. For formal Pest Risk Analysis by regulators (eg Biosecurity Australia), our project will provide genomic tools by which the potential weediness of a regulated plant can be assessed through genetic screening, and forms part of an international effort to identify 'weedy genes'. Read moreRead less
Protecting the Australian chickpea industry through knowledge of the current Ascochyta rabiei fungal population and risk to resistance breeding strategies. Australian chickpea is highly vulnerable to epidemics of Ascochyta blight, which may cause total crop failure. This project will help to maintain Australia's position as a major global chickpea producer through maximising the life span of current resistance genes to A. rabiei. and determining the applicability of other potential resistance so ....Protecting the Australian chickpea industry through knowledge of the current Ascochyta rabiei fungal population and risk to resistance breeding strategies. Australian chickpea is highly vulnerable to epidemics of Ascochyta blight, which may cause total crop failure. This project will help to maintain Australia's position as a major global chickpea producer through maximising the life span of current resistance genes to A. rabiei. and determining the applicability of other potential resistance sources. The knowledge that will be generated regarding the pathogen's potential to overcome host resistance is imperative for developing future disease management strategies, especially since more aggressive isolates exist outside Australia. The project findings will feed directly into the National Australian Chickpea Breeding Program.Read moreRead less
Variation in larval gene expression in a marine invertebrate: implications for population divergence via differential settlement response. Evolutionary and ecological functional genomics is an emerging field that integrates gene profiling technologies with experimental and field approaches of ecology and evolution. I take this approach to address a key problem in marine invertebrate biology: how do larvae respond to their environment and how does variation in this response influence the distribu ....Variation in larval gene expression in a marine invertebrate: implications for population divergence via differential settlement response. Evolutionary and ecological functional genomics is an emerging field that integrates gene profiling technologies with experimental and field approaches of ecology and evolution. I take this approach to address a key problem in marine invertebrate biology: how do larvae respond to their environment and how does variation in this response influence the distribution and evolution of a species? I will use a marine gastropod (abalone) model, for which there exists substantial development and population genetic data, and established aquaculture methodologies. Outcomes of this study will enhance knowledge of the stock structure of this and other commercial fisheries, as well as aquaculture efficiency.Read moreRead less