Evolutionary genetics of bovid genomes over 60,000 years. This project will provide data critical for understanding the genetic background of modern cattle and bison, and how humans have shaped factors such as milk yield, growth rates and muscle mass. It will also reveal genes and genomic regions that were favoured in the domestication process, including those potentially linked to genes of commercial interest for future research. This pioneering ancient DNA approach will also be applicable to a ....Evolutionary genetics of bovid genomes over 60,000 years. This project will provide data critical for understanding the genetic background of modern cattle and bison, and how humans have shaped factors such as milk yield, growth rates and muscle mass. It will also reveal genes and genomic regions that were favoured in the domestication process, including those potentially linked to genes of commercial interest for future research. This pioneering ancient DNA approach will also be applicable to a variety of other domestic crops and animals. The unique temporal analysis of microevolution will provide crucial data for genetic research, and groundproof our attempts to analyse the timing and nature of human evolutionary history, major domestication events and inform conservation management.Read moreRead less
Population structure in the giant Australian cuttlefish - implications for management of a unique eco-tourism and fishery resource in regional Australia. A management strategy for the giant Australian cuttlefish in regional South Australia is required urgently because of potential conflict between ecotourism and fishery sectors. At present, development of a management strategy is stymied by lack of information on stock structure and movements. Analyses of variation in gene frequencies, morphom ....Population structure in the giant Australian cuttlefish - implications for management of a unique eco-tourism and fishery resource in regional Australia. A management strategy for the giant Australian cuttlefish in regional South Australia is required urgently because of potential conflict between ecotourism and fishery sectors. At present, development of a management strategy is stymied by lack of information on stock structure and movements. Analyses of variation in gene frequencies, morphometric and chemical trace element profiles in calcified structures among locations and years will enable the geographic extent of populations or stocks to be determined, including whether natal homing occurs. Such information is critical to sustainable management of the species and design of a marine protected area in the upper Spencer Gulf.Read moreRead less
Evolution, disease and extinction - using ancient and modern Deoxyribonucleic acid (DNA) to investigate molecular evolution in the Tasmanian devil. The Tasmanian devil is Australia's largest living marsupial carnivore and one of Tasmania's key tourism icons. Extinction in the wild will have long-term impacts on Tasmanian native ecosystems and economy. This study will provide critical genetic data and tools to monitor and prioritise conservation strategies, including insurance populations and dis ....Evolution, disease and extinction - using ancient and modern Deoxyribonucleic acid (DNA) to investigate molecular evolution in the Tasmanian devil. The Tasmanian devil is Australia's largest living marsupial carnivore and one of Tasmania's key tourism icons. Extinction in the wild will have long-term impacts on Tasmanian native ecosystems and economy. This study will provide critical genetic data and tools to monitor and prioritise conservation strategies, including insurance populations and disease suppression, aimed at preventing extinction. It will strengthen ongoing conservation programs carried out by the Save the Tasmanian Devil Program and will help publicise the plight of the devil both nationally and internationally.Read moreRead less
The biology and epidemiology of the grapevine canker fungi, Botryosphaeria sp. Decline and dieback of grapevines is becoming an increasing problem for the viticulture industry in NSW. Recently, species of the fungus Botryosphaeria, were isolated from grapevines exhibiting these symptoms. In order to understand the biology and epidemiology of the causal organisms, we aim to; (i) determine species of Botryosphaeria present in NSW vineyards; (ii) determine which species are pathogenic on grapevines ....The biology and epidemiology of the grapevine canker fungi, Botryosphaeria sp. Decline and dieback of grapevines is becoming an increasing problem for the viticulture industry in NSW. Recently, species of the fungus Botryosphaeria, were isolated from grapevines exhibiting these symptoms. In order to understand the biology and epidemiology of the causal organisms, we aim to; (i) determine species of Botryosphaeria present in NSW vineyards; (ii) determine which species are pathogenic on grapevines; (iii) characterise the genetic diversity of strains and; (iv) screen fungicides for the control of these fungi. Information on the species, their biology and pathogenicity on grapevines, will enable the development of appropriate management strategies for its control and may lead to the development of molecular tools to identify species of Botryosphaeria.Read moreRead less
Conservation biology of the largest Australian freshwater tortoise, the broad-shelled tortoise, Chelodina expansa - rare and endangered or cryptic and secure? The Murray is a highly managed river, with flows controlled by catchments and diversions. The combined impacts of water resource development, habitat modification and introduced species are astonishingly diverse, and include extinctions of some fish and invertebrates and depression of populations of many other species. Australia's largest ....Conservation biology of the largest Australian freshwater tortoise, the broad-shelled tortoise, Chelodina expansa - rare and endangered or cryptic and secure? The Murray is a highly managed river, with flows controlled by catchments and diversions. The combined impacts of water resource development, habitat modification and introduced species are astonishingly diverse, and include extinctions of some fish and invertebrates and depression of populations of many other species. Australia's largest chelid turtle, the broad-shelled turtle, is a high-level consumer thought to be particularly sensitive to these changes. We will use an innovative combination of non-destructive technologies to investigate the conservation biology of this species in the Lower Murray, where it is regarded as rare and where its biology is virtually unknown to inform conservation management and restoration initiativesRead moreRead less
A shipload of consequences: studying the impact of Old World diseases on native South American populations via ancient DNA. This pioneering project will give the first real-time picture of the genetic changes induced by epidemics in human populations. This will reveal important new information about the likely impact of future epidemics on the genetic diversity of the immune system in modern human populations and will be of substantial use in building epidemiological models. By proposing to comb ....A shipload of consequences: studying the impact of Old World diseases on native South American populations via ancient DNA. This pioneering project will give the first real-time picture of the genetic changes induced by epidemics in human populations. This will reveal important new information about the likely impact of future epidemics on the genetic diversity of the immune system in modern human populations and will be of substantial use in building epidemiological models. By proposing to combine state-of-the-art science with global problems of humanity, we will address Australia's interests in expanding scientific expertise beyond its borders and place Australia at the leading edge of disease impact studies.Read moreRead less
Saddlepoint approximation, likelihood analysis and ancestral graphs for strong and weak natural selection, genetic drift and population subdivision. Building new research strength in theoretical population genetics and related statistical techniques will enhance Australia's capability in harnessing the power of post-genomic information. Sophisticated statistical techniques that make smart use of genetic data are being developed in this project. The extent to which natural selection and migrati ....Saddlepoint approximation, likelihood analysis and ancestral graphs for strong and weak natural selection, genetic drift and population subdivision. Building new research strength in theoretical population genetics and related statistical techniques will enhance Australia's capability in harnessing the power of post-genomic information. Sophisticated statistical techniques that make smart use of genetic data are being developed in this project. The extent to which natural selection and migration affect current genetic polymorphism on a population level can be quantified using these new methods. New modeling provides a rigorous foundation with which to construct inference techniques currently beyond computational approaches to the data. Assessing selective effects on genetic mutations associated with human disease will be a consequence of this new statistical methodology.Read moreRead less
Evolution of the unique fauna of the Great Artesian Basin mound springs: the impact of aridification and climate change. The mound springs of the Great Artesian Basin represent one of Australia's most unique environments and are of national biodiversity, cultural and economic significance. Their conservation is a major issue following listing of the springs as a threatened ecological community. As economic productivity in the GAB intensifies, the mound springs are under increasing threat from es ....Evolution of the unique fauna of the Great Artesian Basin mound springs: the impact of aridification and climate change. The mound springs of the Great Artesian Basin represent one of Australia's most unique environments and are of national biodiversity, cultural and economic significance. Their conservation is a major issue following listing of the springs as a threatened ecological community. As economic productivity in the GAB intensifies, the mound springs are under increasing threat from escalating groundwater use. The results of this study on the evolution of two crustacean groups will provide significant biological information for management plans, facilitating conservation of mound springs communities, and helping to understand the impacts of water extraction and climate change on this unique habitat.Read moreRead less
Building sound ecological restoration strategies for endangered amphibians. This project integrates the principles of ecology and restoration ecology to secure the persistence of a population of an endangered frog in the context of a large urban renewal and ecological rehabilitation precinct at the Sydney Olympic Park. Habitat rehabilitation at the site provides an unrivalled opportunity for ecology to provide robust scientific direction and support for conservation management practices and deve ....Building sound ecological restoration strategies for endangered amphibians. This project integrates the principles of ecology and restoration ecology to secure the persistence of a population of an endangered frog in the context of a large urban renewal and ecological rehabilitation precinct at the Sydney Olympic Park. Habitat rehabilitation at the site provides an unrivalled opportunity for ecology to provide robust scientific direction and support for conservation management practices and develops the site as a model site illustrating adaptive management practices. The project investigates the role of two threatening processes in amphibian decline in a habitat management context and the outcomes have wide implications for the global amphibian decline. Read moreRead less
Modes of speciation in subterranean diving beetles from calcrete aquifers of central Western Australia. Understanding speciation is a fundamental biological problem and our analyses of the diving beetles will broaden our understanding of modes of speciation and how an extraordinary biodiversity of subterranean animals (stygofauna) evolved in the limestone aquifers of central WA. The aquifers are an important source of water for pastoralists and mining companies and the limestone is also a valuab ....Modes of speciation in subterranean diving beetles from calcrete aquifers of central Western Australia. Understanding speciation is a fundamental biological problem and our analyses of the diving beetles will broaden our understanding of modes of speciation and how an extraordinary biodiversity of subterranean animals (stygofauna) evolved in the limestone aquifers of central WA. The aquifers are an important source of water for pastoralists and mining companies and the limestone is also a valuable resource, so there is a need for further research on the impacts of these uses. We will generate further knowledge of the diversity and biological significance of the stygofauna, information that is critical for the environmentally sustainable management of the aquifers and their ecosystems. Read moreRead less