Discovery Early Career Researcher Award - Grant ID: DE190100544
Funder
Australian Research Council
Funding Amount
$344,682.00
Summary
The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the ....The drivers of genome evolution and diversification in marsupials. This project aims to investigate the impact of the four basic forces of evolution, mutation, selection, neutral drift, and gene flow, on the genome. Genome-scale data have a signature of these forces and extracting it would greatly improve the quality of evolutionary models fit to the data, but the framework to identify the evolutionary forces has not been developed. This project will develop tests for assessing the impact of the primary evolutionary forces on the genome, and test these methods using simulations. The new framework of genomic analysis will be disseminated through an intuitive software package, and will be used to estimate with unprecedented confidence the history of diversification and genome evolution of marsupials.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE170100516
Funder
Australian Research Council
Funding Amount
$372,000.00
Summary
Biodiversity, biogeography and molecular evolution on tropical reefs. This project aims to discover how evolutionary processes, biogeography and molecular change drive biodiversity patterns. Coral reefs support over 800,000 plant and animal species on <0.1% of the ocean. This project will examine how this biodiversity was formed by generating genomic data for reef building corals and reef associated fishes to reconstruct their evolutionary history. It will compare models of speciation, extinctio ....Biodiversity, biogeography and molecular evolution on tropical reefs. This project aims to discover how evolutionary processes, biogeography and molecular change drive biodiversity patterns. Coral reefs support over 800,000 plant and animal species on <0.1% of the ocean. This project will examine how this biodiversity was formed by generating genomic data for reef building corals and reef associated fishes to reconstruct their evolutionary history. It will compare models of speciation, extinction and range change among regions to determine how those processes contribute to the formation of biodiversity gradients and regional assemblage differences. The project expects that better understanding of evolutionary dynamics will inform conservation priorities.Read moreRead less
Nucleomodulin effectors of the environmental pathogen Legionella. This project aims to examine the evolution of Legionella as an intracellular organism and the mechanisms by which the bacteria evade environmental predation by amoebae. Aside from the advancement of knowledge, expected outcomes of this project include a greater understanding of amoebae. This will provide significant benefits, and this knowledge may be used to develop inhibitors of amoebae growth.
Retracing the Early Evolution of Metazoa using Novel Methods and Strategies. Metazoa is one of the best-characterised groups of species in terms of its morphology, fossil record, development, and genetic make-up, but the phylogeny remains obscure because the fossil record is incomplete and because molecular phylogenetic methods have not yet been developed with the complexity of genomic data in mind. We will develop methods and strategies for the analysis of whole genomes, and use them in studies ....Retracing the Early Evolution of Metazoa using Novel Methods and Strategies. Metazoa is one of the best-characterised groups of species in terms of its morphology, fossil record, development, and genetic make-up, but the phylogeny remains obscure because the fossil record is incomplete and because molecular phylogenetic methods have not yet been developed with the complexity of genomic data in mind. We will develop methods and strategies for the analysis of whole genomes, and use them in studies of the mitochondrial genome. We will infer the animal phylogeny, and use it to chart the evolution of animal morphology and development, and the evolution of mitochondrial genetic codes, gene order, and nucleotide content.Read moreRead less
The ancient symbiosis of crayfish and temnocephalan flatworms in Australian freshwaters investigated using molecules, morphology and biogeography. Freshwater parastacid crayfish are widespread and diverse in Australia's freshwaters. Associated with them (living on external surfaces) since their origins on Gondwana are very many species of temnocephalan flatworms. We will elucidate the molecular, morphological and biogeographic history of this association which appears to be ancient and specific. ....The ancient symbiosis of crayfish and temnocephalan flatworms in Australian freshwaters investigated using molecules, morphology and biogeography. Freshwater parastacid crayfish are widespread and diverse in Australia's freshwaters. Associated with them (living on external surfaces) since their origins on Gondwana are very many species of temnocephalan flatworms. We will elucidate the molecular, morphological and biogeographic history of this association which appears to be ancient and specific. The study will shed light on Australia's biological links with New Zealand and South America. It will also use the association between crayfish and temnocephalans as a model to investigate general features of symbioses, including molecular and morphological evolutionary responses and phenomena such as host-switching and cospeciation.Read moreRead less
New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely nove ....New Molecular Approaches to Comparative Phylogeography. Funds are requested to gather data to test new molecular and analytical approaches in the field of molecular phylogeography. We will generate phylogeographic hypotheses from mitochondrial and microsatellite DNA for six species and evaluate the utility of microsatellite data for the reconstruction of phylogeographic history. We will borrow powerful analytical techniques from the field of evolutionary ecology and use them in a completely novel way to test hypotheses of microsatellite diversity. Our research is inter-disciplinary in that we will bridge the gap between molecular phylogenetics and molecular evolution and in so doing make a major advancement in this emerging field.Read moreRead less
Evolutionary, macroecological and phylogenetic patterns in Australasian freshwater crayfish. This project connects Australian systematists to a worldwide project that involves all of the world's living experts on freshwater crayfish evolution in a coordinated effort to answer some very important evolutionary questions. It involves a group of invertebrate animals that are not only readily recognisable, but which in Australia includes the world's largest and the world's most terrestrial crayfish s ....Evolutionary, macroecological and phylogenetic patterns in Australasian freshwater crayfish. This project connects Australian systematists to a worldwide project that involves all of the world's living experts on freshwater crayfish evolution in a coordinated effort to answer some very important evolutionary questions. It involves a group of invertebrate animals that are not only readily recognisable, but which in Australia includes the world's largest and the world's most terrestrial crayfish species. Information gained from the project will contribute to the management of crayfish biodiversity, identification of threatened species and tools to identify these prominent and important members of Australian freshwater ecosystems.Read moreRead less
Developing biogeographic know-how: Improving species divergence and dispersal estimations to examine geological and climatic evolutionary drivers. Anthropogenic activity over the last 150 years is now dramatically changing our global climate and ecosystems. The impact on biodiversity is already evident, and large-scale floral and faunal extinctions are predicted. This study unites a cohort of international experts in an interdisciplinary team to develop new molecular and mathematical methods to ....Developing biogeographic know-how: Improving species divergence and dispersal estimations to examine geological and climatic evolutionary drivers. Anthropogenic activity over the last 150 years is now dramatically changing our global climate and ecosystems. The impact on biodiversity is already evident, and large-scale floral and faunal extinctions are predicted. This study unites a cohort of international experts in an interdisciplinary team to develop new molecular and mathematical methods to expand our fundamental knowledge on how geological and global climate change have affected our world's species components and ecosystems in the past. This research is of environmental significance and global importance as it will improve our ability to predict how species behave under future predicted climate scenarios.Read moreRead less
Experimental co-evolution of Yeast and E. coli. This project aims to measure the rates and genetic mechanisms of adaptation for individual species within a microbial community. Expected outcomes of this interdisciplinary project include the first genomic and phenotypic dataset of a model microbial community, and novel tools for the analysis of meta-genomic datasets. This project has the potential to transform understanding of microbial adaptation.
Evolution of host relationships among the parasitic wasps inferred from morphology, DNA sequences and mitochondrial genome organisation. The parasitic Hymenoptera (wasps) are extensively used as biological control agents of agricultural and horticultural pests worldwide, but detailed information on their evolutionary relationships, how they have coevolved with major host groups, and the patterns of host relationships across various wasp families are lacking. This project will employ DNA sequence ....Evolution of host relationships among the parasitic wasps inferred from morphology, DNA sequences and mitochondrial genome organisation. The parasitic Hymenoptera (wasps) are extensively used as biological control agents of agricultural and horticultural pests worldwide, but detailed information on their evolutionary relationships, how they have coevolved with major host groups, and the patterns of host relationships across various wasp families are lacking. This project will employ DNA sequence data from 'new' genes, information on mitochondrial genome organisation, as well as morphology, to generate robust phylogenies for braconid and scelionid wasps that can be used to determine patterns of host utilisation and predict hosts for wasp groups where this information is currently unknown.Read moreRead less