Deciphering the regulatory principles of metazoan development. This proposal aims to elucidate how regulatory elements in the genome, known as enhancers, determine the identity and function of animal tissues. Currently, it is believed that enhancers cannot be traced across evolutionarily distant animals. The project uses novel concepts, computational and molecular approaches to identify deeply conserved enhancers. It further dissects the mechanism of function by proteomics and high-throughput ge ....Deciphering the regulatory principles of metazoan development. This proposal aims to elucidate how regulatory elements in the genome, known as enhancers, determine the identity and function of animal tissues. Currently, it is believed that enhancers cannot be traced across evolutionarily distant animals. The project uses novel concepts, computational and molecular approaches to identify deeply conserved enhancers. It further dissects the mechanism of function by proteomics and high-throughput genomics. The expected outcomes will overturn our current view on enhancer evolution and reposition our understanding of how enhancers are functionally encoded in the genome. The work is an important contribution to understanding cellular complexity and species evolution with wide-ranging impact in genetics.Read moreRead less
Evolution of nervous system patterning processes: characterisation of homologs of key Drosophila regulatory genes from the coral Acropora. Defining the common mechanisms of nervous system development is one of the major goals of modern biology, but is presently being addressed largely by comparisons between a few very advanced (and therefore specialised) animals. Comparative data from a lower animal is urgently needed, and will clarify many aspects of nervous system evolution and development. Th ....Evolution of nervous system patterning processes: characterisation of homologs of key Drosophila regulatory genes from the coral Acropora. Defining the common mechanisms of nervous system development is one of the major goals of modern biology, but is presently being addressed largely by comparisons between a few very advanced (and therefore specialised) animals. Comparative data from a lower animal is urgently needed, and will clarify many aspects of nervous system evolution and development. The pioneering work carried out on Acropora in this laboratory suggests that it is perhaps the best choice currently available for this purpose. This project will use Acropora to address fundamental questions about the evolution of nervous system developmental processes.Read moreRead less
Evolution of the biofabrication of mineralized structures in animals. Shells and skeletons are produced by a wide range of animals. These highly-order crystalline structures are genetically-encoded and produce high-performance composite materials that exceed present capabilities in human engineering. This international collaboration will elucidate the molecular mechanisms controlling the fabrication of these architectures. This knowledge will contribute significantly to the development of materi ....Evolution of the biofabrication of mineralized structures in animals. Shells and skeletons are produced by a wide range of animals. These highly-order crystalline structures are genetically-encoded and produce high-performance composite materials that exceed present capabilities in human engineering. This international collaboration will elucidate the molecular mechanisms controlling the fabrication of these architectures. This knowledge will contribute significantly to the development of materials for advanced electronics and energy transducers, human bone therapeutics and marine-based products such as pearls and cements, through the identification of genes underlying biofabrication networks and the development of in vitro bioproduction systems.Read moreRead less
The making of a sea shell: function and evolution of genes encoding calcareous architectures of phenomenal strength, purity and beauty. The mollusc shell is composed of microscopic layers of tabular calcium carbonate crystals and thin sheets of proteins with precise nanoscale architectures. This configuration produces a high-performance composite material that exceeds the present capabilities of human engineering. This integrated study will elucidate the molecular mechanisms controlling the fab ....The making of a sea shell: function and evolution of genes encoding calcareous architectures of phenomenal strength, purity and beauty. The mollusc shell is composed of microscopic layers of tabular calcium carbonate crystals and thin sheets of proteins with precise nanoscale architectures. This configuration produces a high-performance composite material that exceeds the present capabilities of human engineering. This integrated study will elucidate the molecular mechanisms controlling the fabrication of these architectures. This knowledge will contribute significantly to the development of materials for advanced electronics and energy transducers, human bone therapeutics and marine?based products such as pearls and cements, through the identification of genes underlying biofabrication networks and the development of in vitro bioproduction systems. Read moreRead less
Genetic Basis of Variable Expression of Glycan Xeno-Autoantigens by Cattle. Meat and dairy products from cattle contain sugar structures (glycans) that are not made by humans. These structures can be recognised by the immune system and lead to allergic reactions, inflammation and potentially cancer. These non-human structures are called xeno-autoantigens or XAs. We have discovered individual cattle that do not produce one of these XAs. We will study the gene required to make XA in the XA-free ca ....Genetic Basis of Variable Expression of Glycan Xeno-Autoantigens by Cattle. Meat and dairy products from cattle contain sugar structures (glycans) that are not made by humans. These structures can be recognised by the immune system and lead to allergic reactions, inflammation and potentially cancer. These non-human structures are called xeno-autoantigens or XAs. We have discovered individual cattle that do not produce one of these XAs. We will study the gene required to make XA in the XA-free cattle to find the underlying mutation. The same approach will be used to look for natural XA-free individuals in other food species. This knowledge may enable us to create a test to facilitate the natural breeding of non-GMO, XA-free livestock to benefit Australian primary producers and provide safer food for consumers.Read moreRead less
The role of short tandem repeat DNA variation in the evolution of human psychological diversity. The proposed work addresses fundamental questions about human nature. It ties together the evolutionary processes that have shaped us as a species with the way our genes influence: our personalities, the way we think and how we behave. It introduces a novel approach to addressing questions about the role of genetics in human variation that will contribute substantially to the way we understand, perce ....The role of short tandem repeat DNA variation in the evolution of human psychological diversity. The proposed work addresses fundamental questions about human nature. It ties together the evolutionary processes that have shaped us as a species with the way our genes influence: our personalities, the way we think and how we behave. It introduces a novel approach to addressing questions about the role of genetics in human variation that will contribute substantially to the way we understand, perceive and manage important aspects of human diversity.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE160101142
Funder
Australian Research Council
Funding Amount
$360,000.00
Summary
Unravelling the structural evolution of centipede toxins. The project intends to improve understanding of venom evolution in centipedes, and uncover new families of peptides with potential application in the agrochemical and pharmaceutical sectors. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range studied, and many groups of venomous a ....Unravelling the structural evolution of centipede toxins. The project intends to improve understanding of venom evolution in centipedes, and uncover new families of peptides with potential application in the agrochemical and pharmaceutical sectors. Venoms have emerged as a rich source of pharmacological tools with potential for development into therapeutics and bioinsecticides. However, venoms-based discovery has been limited by the narrow taxonomical range studied, and many groups of venomous animals remain overlooked. One such group is centipedes, whose venoms contain diverse novel toxins. This project aims to provide an insight into centipede toxin evolution, and establish a structure-based approach to understanding their evolution and structural diversification. The outcomes may contribute to our understanding of protein evolution and support the development of new products.Read moreRead less
Evolutionary genetics of the immune system in social insects. Insects possess efficient innate immunity against pathogens, but social insects are suggested to be vulnerable due to their packed colonies of related individuals. We predict that pathogen pressure varies with life history and microhabitat details, and that this variation will be reflected in the molecular evolutionary rates of immune system genes. Sequence information will be obtained to test these predictions. The results should ....Evolutionary genetics of the immune system in social insects. Insects possess efficient innate immunity against pathogens, but social insects are suggested to be vulnerable due to their packed colonies of related individuals. We predict that pathogen pressure varies with life history and microhabitat details, and that this variation will be reflected in the molecular evolutionary rates of immune system genes. Sequence information will be obtained to test these predictions. The results should be of widespread interest as reflecting the importance of pathogens and life pattern, and increase our knowledge of insect immune systems, potentially enabling circumvention of pest defenses and better protection of beneficial species.Read moreRead less
Linkage Infrastructure, Equipment And Facilities - Grant ID: LE0347875
Funder
Australian Research Council
Funding Amount
$280,000.00
Summary
Enhanced genetic analysis facilities at James Cook University. The acquisition of molecular data, DNA sequences or allele frequencies, is the major requirement of almost all laboratory research in the life sciences, and is the rate-limiting step for many research projects locally. The current application underpins novel research initiatives at James Cook University, and is intended to provide centralized state-of-the-art high throughput DNA sequencing and genotyping facility for the north Queens ....Enhanced genetic analysis facilities at James Cook University. The acquisition of molecular data, DNA sequences or allele frequencies, is the major requirement of almost all laboratory research in the life sciences, and is the rate-limiting step for many research projects locally. The current application underpins novel research initiatives at James Cook University, and is intended to provide centralized state-of-the-art high throughput DNA sequencing and genotyping facility for the north Queensland life sciences community.Read moreRead less
The genomics of adaptation in Wolbachia pipientis, an emerging biocontrol agent. Australians are increasingly exposed to insect-transmitted diseases such as dengue fever. Novel biocontrol methods using the bacterium Wolbachia aim to control insect populations to reduce disease transmission. Our research will be the first to investigate genomic variation and the process of adaptation to new insect hosts in Wolbachia. The novel data and understanding of evolutionary processes we generate will be c ....The genomics of adaptation in Wolbachia pipientis, an emerging biocontrol agent. Australians are increasingly exposed to insect-transmitted diseases such as dengue fever. Novel biocontrol methods using the bacterium Wolbachia aim to control insect populations to reduce disease transmission. Our research will be the first to investigate genomic variation and the process of adaptation to new insect hosts in Wolbachia. The novel data and understanding of evolutionary processes we generate will be critical for screening bacterial biocontrol candidates and designing biocontrol release strategies. It will also strengthen the position of Australian research as a world-leader in the fusion of post-genomics and applied microbiology. Read moreRead less