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Unlocking the potential of bacterial polymers by defining key determinants. Sugary structures that coat the surface of some bacteria, known as capsules, can be modified by bacterial viruses (bacteriophage) in the environment. For the bacterial genus Acinetobacter, this influences their use as naturally renewable 'green' biopolymers for remediating environments contaminated with petroleum hydrocarbons. This project aims to characterise crucial capsule polymerase enzymes using a combination of bio ....Unlocking the potential of bacterial polymers by defining key determinants. Sugary structures that coat the surface of some bacteria, known as capsules, can be modified by bacterial viruses (bacteriophage) in the environment. For the bacterial genus Acinetobacter, this influences their use as naturally renewable 'green' biopolymers for remediating environments contaminated with petroleum hydrocarbons. This project aims to characterise crucial capsule polymerase enzymes using a combination of bioinformatics and experimental methodologies to establish how bacteriophage influence Acinetobacter capsules. Outcomes include the development of an innovative genomics pipeline to detect capsule change, improving the use of living bacteria for bioremediation and sustainable rehabilitation of natural ecosystems.Read moreRead less
Understanding prokaryotic small proteins from context. Prokaryotic small proteins are increasingly recognised to play important biological roles but have been largely overlooked due to the lack of adequate tools to study them. This project aims to develop new methods to identify and predict the functions of small proteins from microbial communities by studying sequence patterns in their genomes. These predicted functions will be confirmed in the laboratory, leading to a catalogue of newly charac ....Understanding prokaryotic small proteins from context. Prokaryotic small proteins are increasingly recognised to play important biological roles but have been largely overlooked due to the lack of adequate tools to study them. This project aims to develop new methods to identify and predict the functions of small proteins from microbial communities by studying sequence patterns in their genomes. These predicted functions will be confirmed in the laboratory, leading to a catalogue of newly characterised small proteins from a diverse range of habitats and geographies. By creating new ways to study the role of small proteins in the global microbiome, we will provide the foundational knowledge required to leverage these proteins for use in biotechnology. Read moreRead less
Microbiome Regulation of the Host Mitochondrial Genome. This project aims to describe newly discovered processes by which bacteria that reside in the gut of an animal influences host mitochondria, the powerhouses of the cell. Using advanced genetic and molecular methodologies, this project aims to generate new knowledge on improving mitochondrial function as well as advance our understanding of the emerging field of microbiome research. Expected outcomes include a novel and universal technology ....Microbiome Regulation of the Host Mitochondrial Genome. This project aims to describe newly discovered processes by which bacteria that reside in the gut of an animal influences host mitochondria, the powerhouses of the cell. Using advanced genetic and molecular methodologies, this project aims to generate new knowledge on improving mitochondrial function as well as advance our understanding of the emerging field of microbiome research. Expected outcomes include a novel and universal technology platform in which to engineer small molecules and probiotics to improve mitochondrial health and enhance fitness in a range of animals. This should provide significant benefits, through both scientifically relevant outcomes and economic benefits through technological advancements.Read moreRead less
Microbial junk food: developing synthetic platforms for plastic degradation. This project aims to establish the genetic basis of polyethelene biodegradation (PED) by microbes from the gut microbiome of plastic-eating caterpillars. It will transform the active microbial PED genes into carefully designed synthetic microbes for efficient, safe and large-scale PED. The project will combine innovative functional microbial genetic tools and synthetic biology techniques with solid biochemistry and bioi ....Microbial junk food: developing synthetic platforms for plastic degradation. This project aims to establish the genetic basis of polyethelene biodegradation (PED) by microbes from the gut microbiome of plastic-eating caterpillars. It will transform the active microbial PED genes into carefully designed synthetic microbes for efficient, safe and large-scale PED. The project will combine innovative functional microbial genetic tools and synthetic biology techniques with solid biochemistry and bioinformatics to produce translatable synthetic platforms containing key genes optimised for efficient PE waste removal. The outcomes will have the potential to transform the relative ineffective and expensive current methods for PE disposal into flexible, cost-effective and sustainable solutions applicable to multiple sectors.Read moreRead less
Data-driven phylodynamics: molecular evolution to epidemiology. This project aims to uncover how different environmental and ecological variables drive the emergence of pathogens with increased transmissibility or virulence, known as variants. This will be achieved through extensive analyses of virus genome data.
This project expects to generate new knowledge in the field of pathogen evolution using novel data-driven statistical techniques for genomic analyses.
Expected outcomes of this proje ....Data-driven phylodynamics: molecular evolution to epidemiology. This project aims to uncover how different environmental and ecological variables drive the emergence of pathogens with increased transmissibility or virulence, known as variants. This will be achieved through extensive analyses of virus genome data.
This project expects to generate new knowledge in the field of pathogen evolution using novel data-driven statistical techniques for genomic analyses.
Expected outcomes of this project are a new understanding of the circumstances under which pathogen variants emerge and a suite of statistical tools to exploit the vast genome data available.
This should provide significant benefits by generating new knowledge with the potential to improve biosecurity, agriculture, and heath.
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