Living on air: how do bacteria scavenge atmospheric trace gases? This project aims to determine the molecular and cellular basis of atmospheric trace gas oxidation by bacteria. Bacteria have a remarkable ability to adapt to resource limitation and environmental change by entering dormant states. Our research has shown they survive in this state by using atmospheric hydrogen and carbon monoxide as energy sources. This interdisciplinary project will determine how bacteria achieve this by elucidati ....Living on air: how do bacteria scavenge atmospheric trace gases? This project aims to determine the molecular and cellular basis of atmospheric trace gas oxidation by bacteria. Bacteria have a remarkable ability to adapt to resource limitation and environmental change by entering dormant states. Our research has shown they survive in this state by using atmospheric hydrogen and carbon monoxide as energy sources. This interdisciplinary project will determine how bacteria achieve this by elucidating the regulation, mechanism, and integration of the three uncharacterised enzymes that mediate this process. Outcomes and benefits include understanding of the processes that facilitate bacterial persistence, regulate atmospheric composition, and in turn support resilience of natural ecosystems.Read moreRead less
Bacterial Proteomics: From Cell Division to Novel Antibiotic Targets. When a cell divides it is essential that each newborn cell gets a complete copy of the DNA. To ensure that this happens, cell division must be tightly controlled. It is not known how this occurs in bacteria. However, if we knew what molecules were involved in this control, we could target them to kill harmful bacteria. This project aims to identify such regulatory molecules as candidate targets for antimicrobial agents, with a ....Bacterial Proteomics: From Cell Division to Novel Antibiotic Targets. When a cell divides it is essential that each newborn cell gets a complete copy of the DNA. To ensure that this happens, cell division must be tightly controlled. It is not known how this occurs in bacteria. However, if we knew what molecules were involved in this control, we could target them to kill harmful bacteria. This project aims to identify such regulatory molecules as candidate targets for antimicrobial agents, with a view to developing powerful, novel antibiotics to protect us from the imminent threat of bioterrorism and antibiotic-resistant bacteria.
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Discovery Early Career Researcher Award - Grant ID: DE180101563
Funder
Australian Research Council
Funding Amount
$365,058.00
Summary
The sweet road to synthesis of bacterial sugar structures. This project aims to characterise the synthesis pathways of nonulosonic acid sugars (NulOs) in bacteria using a combination of bioinformatics and experimental methodologies. Bacteria produce long chains of sugars or glycans on their cell surface known as capsules. These often contain important NulOs that can be uniquely harvested for use in the nutrition, cosmetic and bioremediation industries. By understanding the natural pathways of th ....The sweet road to synthesis of bacterial sugar structures. This project aims to characterise the synthesis pathways of nonulosonic acid sugars (NulOs) in bacteria using a combination of bioinformatics and experimental methodologies. Bacteria produce long chains of sugars or glycans on their cell surface known as capsules. These often contain important NulOs that can be uniquely harvested for use in the nutrition, cosmetic and bioremediation industries. By understanding the natural pathways of their synthesis, ‘glycans-by-design’ can be synthetically created with potent tailor-made properties. This project endeavours to examine how glycans with acidic sugars are produced to generate a fundamental understanding of sugar biology and create a database that will advance industrial applications in glycoengineering.Read moreRead less
Bacterial polycyclic aromatic hydrocarbon transport and degradation. This project aims to investigate the molecular processes underpinning the degradation of polycyclic aromatic hydrocarbons (PAHs) by bacteria. PAHs are persistent environmental contaminants linked to several human diseases, including cancer. Bacteria capable of degrading PAHs could be used to naturally and effectively reduce environmental PAH loads to below safe levels. The project will apply techniques in functional genomics an ....Bacterial polycyclic aromatic hydrocarbon transport and degradation. This project aims to investigate the molecular processes underpinning the degradation of polycyclic aromatic hydrocarbons (PAHs) by bacteria. PAHs are persistent environmental contaminants linked to several human diseases, including cancer. Bacteria capable of degrading PAHs could be used to naturally and effectively reduce environmental PAH loads to below safe levels. The project will apply techniques in functional genomics and biochemistry to help define the ways that PAHs are taken up from the environment by bacteria, their fate within bacterial cells, and the ways that bacteria overcome the inherent toxicity of PAHs. The knowledge generated is expected to enhance our capacity to rationally deploy bacteria for PAH degradation.Read moreRead less
A functional genomic approach for understanding metal ion adaptation in marine cyanobacteria. Unicellular marine cyanobacteria constitute 20-40% of total marine chlorophyll biomass and carbon fixation, and hence significantly impact the global carbon cycle and are very relevant to combating global warming. This research will reveal some of the major mechanisms by which marine cyanobacteria have adapted to metal levels in coastal and oligotrophic environments. Thus these results will help us und ....A functional genomic approach for understanding metal ion adaptation in marine cyanobacteria. Unicellular marine cyanobacteria constitute 20-40% of total marine chlorophyll biomass and carbon fixation, and hence significantly impact the global carbon cycle and are very relevant to combating global warming. This research will reveal some of the major mechanisms by which marine cyanobacteria have adapted to metal levels in coastal and oligotrophic environments. Thus these results will help us understand the distribution and diversity of these organisms in relation to global primary productivity. They will also lead to the development of more robust biomarkers for metal stress and pollution in coastal environments.Read moreRead less
Evolutionary and ecological complexity in an experimentally controlled environment. Understanding the capacity and mechanism of microbial evolution provides the framework for developing new strategies for preventing infectious disease. If we know how evolution works, it will be possible to hamper the capacity to evolve as a mechanism of preventing new diseases and controlling existing ones. This project will provide a mechanistic description of evolution in real time under controlled conditions. ....Evolutionary and ecological complexity in an experimentally controlled environment. Understanding the capacity and mechanism of microbial evolution provides the framework for developing new strategies for preventing infectious disease. If we know how evolution works, it will be possible to hamper the capacity to evolve as a mechanism of preventing new diseases and controlling existing ones. This project will provide a mechanistic description of evolution in real time under controlled conditions. This detailed information will be used in the education of the public and in debates about evolution. The project will also train at least five students in molecular and evolutionary microbiology, essential for facing future challenges.
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Bacterial Cell Division: Discovering how it begins and the network of protein interactions it requires. All cells must coordinate cell division with chromosome replication to ensure that the DNA is partitioned equally into newborn cells. We will establish the defect of a novel mutant blocked in the earliest stage of cell division in bacteria to obtain unique information about this vital regulatory step. We will use our newly discovered protein interaction network to establish what role protein i ....Bacterial Cell Division: Discovering how it begins and the network of protein interactions it requires. All cells must coordinate cell division with chromosome replication to ensure that the DNA is partitioned equally into newborn cells. We will establish the defect of a novel mutant blocked in the earliest stage of cell division in bacteria to obtain unique information about this vital regulatory step. We will use our newly discovered protein interaction network to establish what role protein interactions play in integrating cell division with other biological pathways in the cell to ensure its tight regulation. Our discoveries will facilitate the design of new antibiotics that target cell division to fight antibiotic-resistant bacteria and bioterrorism organisms.Read moreRead less
Mechanism of action of a novel multifunctional bacterial secretion system. This project aims to examine the functional role of holin/lysin secretion systems in the complex lifestyles of important animal bacterial pathogens. This project will generate new knowledge in how bacteria interact with each other, the environment or their hosts through the secretion of proteins or other particles. The results of this research will provide a deeper understanding of the multifunctional roles that these un ....Mechanism of action of a novel multifunctional bacterial secretion system. This project aims to examine the functional role of holin/lysin secretion systems in the complex lifestyles of important animal bacterial pathogens. This project will generate new knowledge in how bacteria interact with each other, the environment or their hosts through the secretion of proteins or other particles. The results of this research will provide a deeper understanding of the multifunctional roles that these unusual secretion systems play and how they contribute to niche adaptation and disease. New insights will lead to identifying targets for future veterinary disease interventions or biotechnological applications.Read moreRead less
Identifying Novel Biosynthetic Pathways in Mycobacteria using DNA Microarray Technology. DNA microarrays are a powerful new bioinformatics-based technology and an ideal tool for characterising complex biosynthetic pathways since the expression of all genes in the bacterial genome can be monitored in a single experiment. In this project we aim to construct and use a DNA microarray to identify novel biosynthetic pathways in mycobacteria. Of particular interest are pathways used to create compone ....Identifying Novel Biosynthetic Pathways in Mycobacteria using DNA Microarray Technology. DNA microarrays are a powerful new bioinformatics-based technology and an ideal tool for characterising complex biosynthetic pathways since the expression of all genes in the bacterial genome can be monitored in a single experiment. In this project we aim to construct and use a DNA microarray to identify novel biosynthetic pathways in mycobacteria. Of particular interest are pathways used to create components of the highly complex and poorly characterised cell wall. Since this structure is unique in the bacterial world, we expect to identify and characterise pathways that are unique to mycobacteria.Read moreRead less
Host cell targets of bacterial virulence effectors. The research described in this proposal will result in a better understanding of the cell biology of host-pathogen interactions. We are in a unique position to analyze the importance of protein/protein interactions between bacterial virulence determinants and host cell proteins using a range of cell biology techniques to address the fundamental, molecular basis of the host-pathogen interaction. In addition we will construct a new genetic tool ....Host cell targets of bacterial virulence effectors. The research described in this proposal will result in a better understanding of the cell biology of host-pathogen interactions. We are in a unique position to analyze the importance of protein/protein interactions between bacterial virulence determinants and host cell proteins using a range of cell biology techniques to address the fundamental, molecular basis of the host-pathogen interaction. In addition we will construct a new genetic tool to identify novel bacterial virulence determinants. We anticipate that a greater knowledge of the factors that contribute to the host-pathogen interaction will provide new insights into the subversion of host cell processes by bacterial pathogens of animals, plants and humans.
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