The rare biosphere; discovering how soil bacteria live on air. In Antarctic deserts where photosynthetic potential is low, we discovered that soil microbiomes sustain their energy and carbon budgets through a novel process reliant on trace gases we coined 'atmospheric chemosynthesis'. But how do soil bacteria literally live on air? This project aims to reveal functional chemoautotrophic pathways in cultured soil bacteria that use trace gases as a source of energy and carbon acquisition. We will ....The rare biosphere; discovering how soil bacteria live on air. In Antarctic deserts where photosynthetic potential is low, we discovered that soil microbiomes sustain their energy and carbon budgets through a novel process reliant on trace gases we coined 'atmospheric chemosynthesis'. But how do soil bacteria literally live on air? This project aims to reveal functional chemoautotrophic pathways in cultured soil bacteria that use trace gases as a source of energy and carbon acquisition. We will perform biogeochamistry, transcriptomics and proteomics on the first model bacterial strains genetically capable of this overlooked process. Outcomes will advance knowledge on microbial metabolism, extending the repertoire of hydrogen-oxidising bacteria to soil ecosystem services, primarily primary production.Read moreRead less
Microbe-produced repellents and their roles in marine pathogen behaviours. Economic losses caused by disease outbreaks in marine fisheries and aquaculture exceed US$6 billion per year globally. Decades of research in human and plant pathogens have revealed that the ability of pathogens to infect their host is governed by behaviours; however our understanding of the chemical cues affecting the behaviour of marine pathogens is very poor. This research program aims to combine new approaches in micr ....Microbe-produced repellents and their roles in marine pathogen behaviours. Economic losses caused by disease outbreaks in marine fisheries and aquaculture exceed US$6 billion per year globally. Decades of research in human and plant pathogens have revealed that the ability of pathogens to infect their host is governed by behaviours; however our understanding of the chemical cues affecting the behaviour of marine pathogens is very poor. This research program aims to combine new approaches in microfluidics and chemical imaging to identify the cues that govern the behaviour of marine pathogens. Expected outcomes include an improved capacity to predict, monitor and manage marine diseases, as well as novel strategies to prevent disease outbreaks, helping to protect Australia’s valuable marine estate.Read moreRead less
Do marine heat waves cause pathogen outbreaks in Australian coastal waters? This project aims to identify links between increasingly frequent Marine Heat Wave (MHW) events and outbreaks of microbes that cause disease in marine animals, reduced aquaculture yields and human health hazards. Pathogenic bacteria from the Vibrio genus exhibit a preference for elevated seawater temperature and this project will test the hypothesis that episodic MHWs will trigger blooms of dangerous species. Using innov ....Do marine heat waves cause pathogen outbreaks in Australian coastal waters? This project aims to identify links between increasingly frequent Marine Heat Wave (MHW) events and outbreaks of microbes that cause disease in marine animals, reduced aquaculture yields and human health hazards. Pathogenic bacteria from the Vibrio genus exhibit a preference for elevated seawater temperature and this project will test the hypothesis that episodic MHWs will trigger blooms of dangerous species. Using innovative ecogenomic tools, this project will track the impact of MHWs on the dynamics of pathogenic Vibrio within coastal habitats, oyster farming facilities and coral reefs. The benefit of this project will be essential new knowledge on an emerging threat to Australia’s valuable marine estate, food security and public health.Read moreRead less
Defining the Microbial-scale Processes Governing Ocean Health . This project aims to resolve the foundations of healthy ocean function by employing innovative approaches to uncover the links between marine chemistry and microbiology. While the importance of microbes in governing ocean health is unquestionable, they are often studied over inappropriately large-scales, leading to inaccurate interpretation of the oceanic processes that ultimately influence fishery production and climate control. W ....Defining the Microbial-scale Processes Governing Ocean Health . This project aims to resolve the foundations of healthy ocean function by employing innovative approaches to uncover the links between marine chemistry and microbiology. While the importance of microbes in governing ocean health is unquestionable, they are often studied over inappropriately large-scales, leading to inaccurate interpretation of the oceanic processes that ultimately influence fishery production and climate control. We will develop new oceanographic tools and analytical techniques to provide a unique "microbes-eye-view" of the sea. The project's outcomes are anticipated to deliver transformative new knowledge on the controls of ocean productivity and sustainability, helping to safeguard Australia’s valuable marine estate.Read moreRead less
Microbial community stability dynamics to environmental triggers. This project aims to advance our knowledge of the structural/functional dynamics of complex microbial communities by defining stability in response to environmental influences such as nutrient stress, pathogen invasion and antibiotics/chemicals. Using innovative microbial consortia modelling, to identify communities at risk of homeostatic disruption, we will develop and test pre-emptive microbial manipulation strategies for restor ....Microbial community stability dynamics to environmental triggers. This project aims to advance our knowledge of the structural/functional dynamics of complex microbial communities by defining stability in response to environmental influences such as nutrient stress, pathogen invasion and antibiotics/chemicals. Using innovative microbial consortia modelling, to identify communities at risk of homeostatic disruption, we will develop and test pre-emptive microbial manipulation strategies for restoring community stability. This project will yield significant global impact and economic/health benefit for humans and animals.Read moreRead less
Atmospheric carbon fixation: a novel microbial process in Antarctic soils. This project aims to challenge our global understanding of carbon fixation. In most ecosystems, phototrophy supports higher-trophic life, yet no genetic evidence for photosynthesis exists in Antarctic desert soils. The project will determine the significance of atmospheric chemotrophy, a microbial driven process based on the consumption of atmospheric gases that it is proposed supports energy maintenance and biomass assim ....Atmospheric carbon fixation: a novel microbial process in Antarctic soils. This project aims to challenge our global understanding of carbon fixation. In most ecosystems, phototrophy supports higher-trophic life, yet no genetic evidence for photosynthesis exists in Antarctic desert soils. The project will determine the significance of atmospheric chemotrophy, a microbial driven process based on the consumption of atmospheric gases that it is proposed supports energy maintenance and biomass assimilation in nutrient-starved Antarctic desert soils. Additionally, the project will establish if these processes are structuring soil microbial communities, particularly in response to climate change. The expected project outcome is knowledge of primary production at the nutritional limits of life. This should provide significant benefit, such as a shift in our knowledge of the biological sciences as a new minimalistic mode of primary production.Read moreRead less
Antarctic virus-host interactions. This project aims to determine how hosts and viruses interact in the natural environment and during alien invasions. Viruses are important in Antarctic aquatic systems, but foreign viruses introduced into Antarctica threaten indigenous species. Despite this awareness, big gaps exist in understanding how viruses interact with their hosts and how Antarctic communities respond to invasion. This knowledge is expected to reveal how life in Antarctica evolved, and pr ....Antarctic virus-host interactions. This project aims to determine how hosts and viruses interact in the natural environment and during alien invasions. Viruses are important in Antarctic aquatic systems, but foreign viruses introduced into Antarctica threaten indigenous species. Despite this awareness, big gaps exist in understanding how viruses interact with their hosts and how Antarctic communities respond to invasion. This knowledge is expected to reveal how life in Antarctica evolved, and provide information useful for developing policy to manage the Antarctic environment with scope for collaborations between industry and researchers to find practical solutions for biotechnology industries.Read moreRead less
Do binding proteins allow cyanobacteria to scavenge diverse nutrients? Marine cyanobacteria are abundant primary producers that underlie the entire marine food web. They encode a diverse range of predicted nutrient uptake systems that are highly conserved, suggesting these transporters play critical roles in their success in diverse marine ecosystems. However, there is very limited data regarding their function, specificity and ecological importance. Using our pioneering combinatorial approach, ....Do binding proteins allow cyanobacteria to scavenge diverse nutrients? Marine cyanobacteria are abundant primary producers that underlie the entire marine food web. They encode a diverse range of predicted nutrient uptake systems that are highly conserved, suggesting these transporters play critical roles in their success in diverse marine ecosystems. However, there is very limited data regarding their function, specificity and ecological importance. Using our pioneering combinatorial approach, we will undertake systematic functional characterisation of these nutrient uptake systems and determine their physiological and ecological importance. Our integrative science will provide a molecules-to-ecosystems understanding of cyanobacterial nutrient acquisition.Read moreRead less
Probiotics for the ocean. This project aims to investigate how bacteria can improve the growth, health and environmental adaptation of marine seaweeds (macroalgae). By using new knowledge of microbial functions and innovative approaches in experimental ecology the project will develop bacterial consortia that benefit seaweeds. It is anticipated that these bacteria will constitute novel marine probiotics that can be used to enhance and protect the performance of macroalgae in their natural enviro ....Probiotics for the ocean. This project aims to investigate how bacteria can improve the growth, health and environmental adaptation of marine seaweeds (macroalgae). By using new knowledge of microbial functions and innovative approaches in experimental ecology the project will develop bacterial consortia that benefit seaweeds. It is anticipated that these bacteria will constitute novel marine probiotics that can be used to enhance and protect the performance of macroalgae in their natural environment or in aquaculture systems. Such outcomes may contribute to safeguarding marine ecosystems against anthropogenic stressors (such as pollutants) and provide opportunities for the development of a blue economy.Read moreRead less
Peril and promise: Origins and spread of integron gene cassettes. Integrons have a major role in spreading antibiotic resistance genes among pathogens. They do so by capturing gene cassettes encoding resistance, yet how these cassettes are generated, the taxa in which they originate, and the range of traits that cassettes can encode have been outstanding questions for 30 years. This project addresses these long standing questions. The project will analyze single bacterial cells to detect newly ....Peril and promise: Origins and spread of integron gene cassettes. Integrons have a major role in spreading antibiotic resistance genes among pathogens. They do so by capturing gene cassettes encoding resistance, yet how these cassettes are generated, the taxa in which they originate, and the range of traits that cassettes can encode have been outstanding questions for 30 years. This project addresses these long standing questions. The project will analyze single bacterial cells to detect newly generated cassettes and assign them to specific taxa, using an innovative method that links cassette DNA to bacterial 16S rDNA. Understanding cassette origins is the key to controlling their activity, both to harness integrons for biotechnology, and to prevent pathogens from acquiring new, dangerous traits. Read moreRead less