Coastal permeable sediments as a novel source of greenhouse gases. Emissions of the greenhouse gases nitrous oxide and methane are increasing from unknown sources. High concentrations of these gases have been observed in coastal waters which bear the brunt of nutrient pollution (primarily nitrogen) from cities and agriculture. This project aims to investigate the sources of these gases within these environments and the processes that lead to their formation. This new knowledge is expected to ....Coastal permeable sediments as a novel source of greenhouse gases. Emissions of the greenhouse gases nitrous oxide and methane are increasing from unknown sources. High concentrations of these gases have been observed in coastal waters which bear the brunt of nutrient pollution (primarily nitrogen) from cities and agriculture. This project aims to investigate the sources of these gases within these environments and the processes that lead to their formation. This new knowledge is expected to develop new models which aim to enable us to better predict the emissions of greenhouse gases within coastal waters. Expected benefit of this will be strategies to reduce greenhouse gas emissions.Read moreRead less
Ochre archaeomicrobiology: a new tool for understanding Aboriginal exchange. This project aims to identify the origins and movements of Australian archaeological ochre through the development of a novel tool combining genomic and chemical analysis. The geographic distribution of Australian ochre is closely linked to Aboriginal creation stories, while its physical distribution by people is evidence of cultural cooperation. Using this new archaeomicrobiological technique, the project aims to answe ....Ochre archaeomicrobiology: a new tool for understanding Aboriginal exchange. This project aims to identify the origins and movements of Australian archaeological ochre through the development of a novel tool combining genomic and chemical analysis. The geographic distribution of Australian ochre is closely linked to Aboriginal creation stories, while its physical distribution by people is evidence of cultural cooperation. Using this new archaeomicrobiological technique, the project aims to answer significant questions about past human behaviour, in terms of trade, cultural interactions, territoriality and colonisation. The method also has the potential to benefit traditional owners by contributing to repatriation projects. The collaborative detailed recording, sampling and analysis of ochre sources on traditional lands will also assist Aboriginal communities to manage this important aspect of their cultural heritage.Read moreRead less
Bacterial communities in metropolitan, rural and indigenous Australians. This project aims to apply recently developed culturing methods to archive and phenotype bacterial species found in the human gut in a representative sample from metropolitan, rural and indigenous Australians. This project expects to isolate, genome sequence, classify, characterize and permanently archive 1500 bacterial species. Expected outcomes of this project include detailed knowledge of previously undiscovered bacteria ....Bacterial communities in metropolitan, rural and indigenous Australians. This project aims to apply recently developed culturing methods to archive and phenotype bacterial species found in the human gut in a representative sample from metropolitan, rural and indigenous Australians. This project expects to isolate, genome sequence, classify, characterize and permanently archive 1500 bacterial species. Expected outcomes of this project include detailed knowledge of previously undiscovered bacterial species, improved methods to measure the bacterial species that inhabit the human gut and a detailed understanding of the gut microbiota of Australians. This project should significantly enhance our knowledge of bacterial diversity and evolution and provide detailed insights into bacterial transmission.Read moreRead less
Unlocking the secrets of metabolic variation in a highly diverse bacterium. This project aims to explore metabolic diversity of Klebsiella pneumoniae, a bacterium relevant to the agricultural, veterinary, medical and biotechnology industries. It is expected to reveal significant insights into the biology of this diverse organism via an innovative combination of DNA sequence analyses and metabolic modelling. Expected outcomes include 4500 novel metabolic models and a novel population metabolic fr ....Unlocking the secrets of metabolic variation in a highly diverse bacterium. This project aims to explore metabolic diversity of Klebsiella pneumoniae, a bacterium relevant to the agricultural, veterinary, medical and biotechnology industries. It is expected to reveal significant insights into the biology of this diverse organism via an innovative combination of DNA sequence analyses and metabolic modelling. Expected outcomes include 4500 novel metabolic models and a novel population metabolic framework. This should provide major benefits for understanding bacterial ecology and evolution, and for future studies seeking to optimise industrial processes or prevent disease. It will also directly contribute to building Australia’s capacity in computational biology- a key driver of biotechnology innovation.Read moreRead less
Deciphering the coral minimal microbiome. This project aims to decipher the functions of coral-associated bacteria by taking advantage of low-diversity microbiomes that are naturally found in some coral species. A further aim is to unveil the importance of bacterial genome evolution in coral adaptation to climate change. Climate warming is the biggest threat to coral reefs with half of Australia’s Great Barrier Reef (GBR) corals dead due to recent summer heat waves. Expected outcomes are an incr ....Deciphering the coral minimal microbiome. This project aims to decipher the functions of coral-associated bacteria by taking advantage of low-diversity microbiomes that are naturally found in some coral species. A further aim is to unveil the importance of bacterial genome evolution in coral adaptation to climate change. Climate warming is the biggest threat to coral reefs with half of Australia’s Great Barrier Reef (GBR) corals dead due to recent summer heat waves. Expected outcomes are an increased understanding of how bacteria contribute to coral heat tolerance, and new knowledge to assist in the development of bacterial probiotics for enhancing coral thermal tolerance. This should provide significant benefits to the protection of the GBR and Australia’s economy.Read moreRead less
Unraveling the spread of antibiotic resistance genes across soil food webs. The emerging spread of antibiotic resistance genes (ARGs) in the environment is a major threat to public health and food security. This project aims to develop new knowledge about the key transmission routes of ARGs across multiple trophic levels in soil food webs, and how the interactions of plant, soil and fauna contribute to the profiles of environmental ARGs. Expected outcomes include an improved understanding of the ....Unraveling the spread of antibiotic resistance genes across soil food webs. The emerging spread of antibiotic resistance genes (ARGs) in the environment is a major threat to public health and food security. This project aims to develop new knowledge about the key transmission routes of ARGs across multiple trophic levels in soil food webs, and how the interactions of plant, soil and fauna contribute to the profiles of environmental ARGs. Expected outcomes include an improved understanding of the role of fauna in regulating ARGs in the soil environment and the spreading mechanisms of antibiotic resistance in soil food webs. This project will contribute to the development of evidence-based interventions to tackle environmental antibiotic resistance, which has benefits for the environment and public health.
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Formation and stabilisation of coastal blue carbon. Blue carbon is organic carbon stored within coastal vegetated ecosystems. This project will examine the composition, formation and dynamics of blue carbon in a range of coastal ecosystems. Combining advanced analytical chemistry with environmental microbiology, we will discover how blue carbon is stabilised and destabilised, a critical factor in nature-based climate change mitigation strategies. Further, we will gain a quantitative understandin ....Formation and stabilisation of coastal blue carbon. Blue carbon is organic carbon stored within coastal vegetated ecosystems. This project will examine the composition, formation and dynamics of blue carbon in a range of coastal ecosystems. Combining advanced analytical chemistry with environmental microbiology, we will discover how blue carbon is stabilised and destabilised, a critical factor in nature-based climate change mitigation strategies. Further, we will gain a quantitative understanding of blue carbon contributions to carbon cycling, providing enhanced modeling and prediction of climate-cycle feedbacks in response to biotic and environmental change. This research will significantly benefit Australia’s effective management of coastal vegetated ecosystems for maximum carbon offsets.Read moreRead less
Bio-recovery of rare earth elements from Australian soils and mine tailings. This project aims to discover how microbes dissolve weathering-resistant phosphate minerals that contain valuable rare earth elements used widely in modern technology. This discovery would create new knowledge in the interdisciplinary fields of biogeochemistry and biohydrometallurgy, using an innovative combination of techniques in metagenomics, microbiology and mineralogy. Expected research outcomes include new, more ....Bio-recovery of rare earth elements from Australian soils and mine tailings. This project aims to discover how microbes dissolve weathering-resistant phosphate minerals that contain valuable rare earth elements used widely in modern technology. This discovery would create new knowledge in the interdisciplinary fields of biogeochemistry and biohydrometallurgy, using an innovative combination of techniques in metagenomics, microbiology and mineralogy. Expected research outcomes include new, more economic and environmentally sustainable biotechnologies for recovering rare earth elements and increasing phosphorus availability in Australian mineral deposits and soils. These outcomes should benefit the mining and agricultural sectors, by decreasing Australia's dependency on overseas REE supply and the use of fertilizers.Read moreRead less
Defining and engineering the rhizosphere for Australian rainfall patterns. The manner in which plants use carbon and water defines agricultural and natural landscapes. Today's models that predict plant improvement rely on carbon and water usage by plant leaves. However, the first interaction between plants, carbon and water occurs in the rhizosphere; a diverse zone with dynamic root-microbiome interactions. We will use advanced visualisation and mathematics to determine fine scale relationships ....Defining and engineering the rhizosphere for Australian rainfall patterns. The manner in which plants use carbon and water defines agricultural and natural landscapes. Today's models that predict plant improvement rely on carbon and water usage by plant leaves. However, the first interaction between plants, carbon and water occurs in the rhizosphere; a diverse zone with dynamic root-microbiome interactions. We will use advanced visualisation and mathematics to determine fine scale relationships between microbes and roots in the rhizosphere when exposed to water levels reflective of current and projected rainfall values. From generated knowledge of water and carbon dynamics caused by intimate microbe-root interactions, we will provide water saving, soil regeneration and improved carbon biosequestration strategies.Read moreRead less
Functional dynamics of skeletal microbiota in healthy and bleached corals. Little is known about the microbiota inhabiting coral skeletons, but several sources of evidence point to their importance in the coral holobiont. Particularly during coral bleaching, drastic changes happen in the skeletal microbiome, with potential beneficial as well as detrimental effects on the holobiont. This project will characterise the functions of skeletal microbiota, how microbial communities are structured along ....Functional dynamics of skeletal microbiota in healthy and bleached corals. Little is known about the microbiota inhabiting coral skeletons, but several sources of evidence point to their importance in the coral holobiont. Particularly during coral bleaching, drastic changes happen in the skeletal microbiome, with potential beneficial as well as detrimental effects on the holobiont. This project will characterise the functions of skeletal microbiota, how microbial communities are structured along physico-chemical gradients, and how microbial gene expression changes through coral bleaching. This will lead to better insights into the roles of skeletal microbiota in the holobiont, the processes occurring in the skeleton during bleaching, and the role that skeletal microbiota may play in the fate of bleached corals.Read moreRead less