Genome-level insight into the dynamics of a model coral microbiome. The aim of the project is to examine structural and functional microbiome dynamics in an ecologically important coral on the Great Barrier Reef along a natural temperature gradient. Microorganisms form an intimate symbiotic relationship with corals and are critical to their health. However, the microbiome can be disrupted by environmental perturbations, including higher-than-normal ocean temperatures, leaving the coral susceptib ....Genome-level insight into the dynamics of a model coral microbiome. The aim of the project is to examine structural and functional microbiome dynamics in an ecologically important coral on the Great Barrier Reef along a natural temperature gradient. Microorganisms form an intimate symbiotic relationship with corals and are critical to their health. However, the microbiome can be disrupted by environmental perturbations, including higher-than-normal ocean temperatures, leaving the coral susceptible to disease and bleaching. Currently, our understanding of how the microbiome composition and metabolic function change in response to seasonal temperature variation and disease is limited. This project is designed to provide insight into the role the microbiome plays in maintaining coral health and may aid in the long-term preservation of the reefs.Read moreRead less
Revealing the microbial process of iron-driven anaerobic ammonium oxidation. This project aims to gain fundamental understanding of the recently discovered microbially-facilitated process of anaerobic ammonium oxidation that is coupled to iron reduction. This process (called Feammox) is suggested to be responsible for significant nitrogen loss from soil and sediment ecosystems, resulting in pollution of the atmosphere and our water systems. In the project, the Feammox microorganisms will be enri ....Revealing the microbial process of iron-driven anaerobic ammonium oxidation. This project aims to gain fundamental understanding of the recently discovered microbially-facilitated process of anaerobic ammonium oxidation that is coupled to iron reduction. This process (called Feammox) is suggested to be responsible for significant nitrogen loss from soil and sediment ecosystems, resulting in pollution of the atmosphere and our water systems. In the project, the Feammox microorganisms will be enriched and characterised to reveal the metabolic details of the iron reduction and ammonium oxidation pathways. This will improve understanding of ecosystem nitrogen flux and benefit the management of nitrogen fertilizers used to meet the food and energy requirements of the world’s growing populations.Read moreRead less
Stress, virulence and bacterial disease in temperate seaweeds: the rise of the microbes. Climate change is predicted to increase the spread and virulence of pathogens, and decrease the resistance to disease via temperature stress on the hosts. Combined with other human impacts (higher nutrients, pollution), we may be facing a major rise in the effect of disease on natural communities. However, these effects are largely unstudied. We will investigate the impact of marine pathogens on kelps and ....Stress, virulence and bacterial disease in temperate seaweeds: the rise of the microbes. Climate change is predicted to increase the spread and virulence of pathogens, and decrease the resistance to disease via temperature stress on the hosts. Combined with other human impacts (higher nutrients, pollution), we may be facing a major rise in the effect of disease on natural communities. However, these effects are largely unstudied. We will investigate the impact of marine pathogens on kelps and other seaweeds when they are stressed by temperature, elevated nutrients or other anthropogenic stressors. Kelp are the 'trees of the oceans', the organisms responsible for creating much of the habitat that fishes and other organisms live in. The loss of kelp forests due to disease would radically change these environments.Read moreRead less
Simultaneous analysis of root-derived plant defences and the associated microbiome. Australia is dependent on sustainable agricultural yields, which need to be maintained or improved. This production capacity is currently under threat by new and existing diseases which are predicted to worsen with climate change. This project will provide a global picture of how disease resistance and soil microbial communities are causally linked, and provide new strategies for disease control. In doing so, it ....Simultaneous analysis of root-derived plant defences and the associated microbiome. Australia is dependent on sustainable agricultural yields, which need to be maintained or improved. This production capacity is currently under threat by new and existing diseases which are predicted to worsen with climate change. This project will provide a global picture of how disease resistance and soil microbial communities are causally linked, and provide new strategies for disease control. In doing so, it will develop intellectual property (IP) and infrastructure that can be used in soil health management. This will provide many benefits to Australia, including sustainable agriculture in the context of climate variability and an increased demand for food, biomaterials and biofuels.Read moreRead less
Revealing the evolutionary and ecological dynamics of avian influenza virus. This project aims to understand how avian influenza virus (AIV) emerges, evolves and spreads in wild birds. AIV has the potential to devastate the poultry industry and cause human pandemics, but the factors that shape the genetic diversity of AIV in its wild bird reservoir are poorly understood. The project plans to combine genomic, ecological and phylogenetic approaches to reveal key aspects of AIV evolution, as well a ....Revealing the evolutionary and ecological dynamics of avian influenza virus. This project aims to understand how avian influenza virus (AIV) emerges, evolves and spreads in wild birds. AIV has the potential to devastate the poultry industry and cause human pandemics, but the factors that shape the genetic diversity of AIV in its wild bird reservoir are poorly understood. The project plans to combine genomic, ecological and phylogenetic approaches to reveal key aspects of AIV evolution, as well as the risk for future viral emergence. Using sampling sites in Australia and Antarctica, it plans to investigate AIV diversity, the evolutionary dynamics of AIV in wild birds and poultry, and the role played by environmental transmission in AIV ecology.Read moreRead less
A functional genomic approach for understanding metal ion adaptation in marine cyanobacteria. Unicellular marine cyanobacteria constitute 20-40% of total marine chlorophyll biomass and carbon fixation, and hence significantly impact the global carbon cycle and are very relevant to combating global warming. This research will reveal some of the major mechanisms by which marine cyanobacteria have adapted to metal levels in coastal and oligotrophic environments. Thus these results will help us und ....A functional genomic approach for understanding metal ion adaptation in marine cyanobacteria. Unicellular marine cyanobacteria constitute 20-40% of total marine chlorophyll biomass and carbon fixation, and hence significantly impact the global carbon cycle and are very relevant to combating global warming. This research will reveal some of the major mechanisms by which marine cyanobacteria have adapted to metal levels in coastal and oligotrophic environments. Thus these results will help us understand the distribution and diversity of these organisms in relation to global primary productivity. They will also lead to the development of more robust biomarkers for metal stress and pollution in coastal environments.Read moreRead less
Microbial sulphatises in the rhizosphere and their control by interactions with plants. Plant-microbe interactions are critical in mobilizing soil sulphur for crop growth. This project will identify the microbes responsible for delivering sulphur to two major Australian crops, and will examine how the plants stimulate this activity in their root zone. The results have potential application for sustainable agriculture in Australia.
Quantifying the impacts of environmental stress on marine microorganisms. Microorganisms underpin marine ecosystem health, yet there is limited understanding of how they will respond to different environmental pressures. This project will resolve this critical knowledge gap by developing a unique molecular platform for deriving quantitative stress thresholds for microbial communities inhabiting key reef habitats (seawater, sediments, invertebrates). Quantifying how reef microorganisms respond to ....Quantifying the impacts of environmental stress on marine microorganisms. Microorganisms underpin marine ecosystem health, yet there is limited understanding of how they will respond to different environmental pressures. This project will resolve this critical knowledge gap by developing a unique molecular platform for deriving quantitative stress thresholds for microbial communities inhabiting key reef habitats (seawater, sediments, invertebrates). Quantifying how reef microorganisms respond to a broad suite of environmental perturbations (temperature, nutrients, contaminants), will generate stress-response data that can be incorporated alongside eukaryotic data in environmental assessments, greatly improving the ecological relevance and reliability of risk and vulnerability assessments.Read moreRead less
Microbial genomics of the southern ocean: monitoring environmental health. This program will derive an integrated understanding of microbial ecology which is essential for determining ways of preserving the health of the World's ecosystems. Through the development of a unique microbial genomics program, Australia will remain a world leader in Antarctic biology, strengthening Australia's reputation in technologically innovative scientific programs of global significance, training local scientists ....Microbial genomics of the southern ocean: monitoring environmental health. This program will derive an integrated understanding of microbial ecology which is essential for determining ways of preserving the health of the World's ecosystems. Through the development of a unique microbial genomics program, Australia will remain a world leader in Antarctic biology, strengthening Australia's reputation in technologically innovative scientific programs of global significance, training local scientists in cutting edge genomic biology and fostering the interests of the international community in sciences ranging from microbial ecology to climate change.Read moreRead less
Functional analysis of Bacillus thuringiensis crystal toxins. Pore-forming toxins, such as anthrax, hemolysin, cholera and diphtheria toxins, are among the most virulent microbial toxins, posing a threat to humans and lifestock. We are using a novel functional approach to test possible lectin and antimicrobial peptide functions of a typical and economically important pore-forming toxin, the crystal endotoxin from Bacillus thuringiensis, to examine why toxicity of the lectin-containing toxin is ....Functional analysis of Bacillus thuringiensis crystal toxins. Pore-forming toxins, such as anthrax, hemolysin, cholera and diphtheria toxins, are among the most virulent microbial toxins, posing a threat to humans and lifestock. We are using a novel functional approach to test possible lectin and antimicrobial peptide functions of a typical and economically important pore-forming toxin, the crystal endotoxin from Bacillus thuringiensis, to examine why toxicity of the lectin-containing toxin is restricted to invertebrates only, while the amphipathic peptide alone is also toxic to many vertebrate cells. The outcome of these experiments has important implications for the sustainable use of biopesticides and for the prevention and containment of infectious diseases.Read moreRead less