New mathematical approaches to learn the equations of life from noisy data. New mathematical models and mathematical modelling methods must be continually developed to interpret emerging biotechnology experiments. Contemporary research in tissue engineering involves growing tissues on 3d-printed scaffolds to mimic constrained in vivo geometries. Previous mathematical models of tissue growth focus on computationally expensive discrete mathematical models that are poorly suited for parameter infe ....New mathematical approaches to learn the equations of life from noisy data. New mathematical models and mathematical modelling methods must be continually developed to interpret emerging biotechnology experiments. Contemporary research in tissue engineering involves growing tissues on 3d-printed scaffolds to mimic constrained in vivo geometries. Previous mathematical models of tissue growth focus on computationally expensive discrete mathematical models that are poorly suited for parameter inference and experimental design. This project will deliver and deploy high-fidelity, computationally efficient moving boundary continuum mathematical models that will: (i) predict/interpret new experiments, (ii) provide quantitative insight into biological mechanisms, and (iii) enable reproducible experimental design.Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE240100650
Funder
Australian Research Council
Funding Amount
$443,237.00
Summary
Behind the barrier: using mathematics to understand the neuro-immune system. This project aims to develop new mathematical methods to study healthy immune cell regulation in the brain and movement across the Blood Brain Barrier. The project expects to develop novel deterministic and stochastic mathematics that captures the stochasticity of immune cells in the Central Nervous System (brain and spine) and form the foundation of a new field of mathematical research: mathematical neuroimmunology. Ex ....Behind the barrier: using mathematics to understand the neuro-immune system. This project aims to develop new mathematical methods to study healthy immune cell regulation in the brain and movement across the Blood Brain Barrier. The project expects to develop novel deterministic and stochastic mathematics that captures the stochasticity of immune cells in the Central Nervous System (brain and spine) and form the foundation of a new field of mathematical research: mathematical neuroimmunology. Expected benefits of this project include new mathematical tools, biological insight, and strong interdisciplinary collaborations. From this project, Australia will be placed at the forefront of mathematical research in neuroimmunology, and there will be a complete understanding of homeostasis of the neuro-immune system. Read moreRead less
Surveillance and sampling to maintain absence of pests and diseases. This project aims to develop empirically validated statistical and mathematical methods for industry and government to deliver more efficient biosecurity surveillance programs. The project endeavours to enhance biosecurity at the border and within Australia, while minimising the costs and burden of testing. Expected project outcomes include effective surveillance and sampling for high-priority threats, accessible software for d ....Surveillance and sampling to maintain absence of pests and diseases. This project aims to develop empirically validated statistical and mathematical methods for industry and government to deliver more efficient biosecurity surveillance programs. The project endeavours to enhance biosecurity at the border and within Australia, while minimising the costs and burden of testing. Expected project outcomes include effective surveillance and sampling for high-priority threats, accessible software for decision-makers, and generalisable approaches to address rapidly increasing biosecurity risks. Significant benefits include maintaining absence of key pathogens and pests in Australia.Read moreRead less
Biophysics of the brain’s waste disposal system: Understanding why we sleep. This project aims to develop a new biophysical model of the brain, founded on the recently discovered glymphatic system responsible for waste disposal during sleep. It sets out to formulate, analyse, and validate rigorous new multiscale quantitative modelling – to advance the study of sleep and brain clearance dynamics, at timescales from hours to decades. Among expected outcomes are powerful models ready for applicatio ....Biophysics of the brain’s waste disposal system: Understanding why we sleep. This project aims to develop a new biophysical model of the brain, founded on the recently discovered glymphatic system responsible for waste disposal during sleep. It sets out to formulate, analyse, and validate rigorous new multiscale quantitative modelling – to advance the study of sleep and brain clearance dynamics, at timescales from hours to decades. Among expected outcomes are powerful models ready for application at both population and individual level, and testable predictions concerning the sleep patterns that lead to aggregation of waste in the brain and eventual cognitive decline. Project outcomes should also benefit society and the economy though translation into interventions for sleep disturbance – in future applied research.Read moreRead less
Unpacking the immune system with applied mathematics. This project aims to model immune interactions across cells and structures spanning scales of nanometres to millimetres. It expects to develop innovative mathematical insights, improve our understanding of immunology, and consolidate collaborations with top American and European laboratories and groups. Expected outcomes include cutting-edge techniques for multiscale biological modelling and improved prediction and analysis of immune dynami ....Unpacking the immune system with applied mathematics. This project aims to model immune interactions across cells and structures spanning scales of nanometres to millimetres. It expects to develop innovative mathematical insights, improve our understanding of immunology, and consolidate collaborations with top American and European laboratories and groups. Expected outcomes include cutting-edge techniques for multiscale biological modelling and improved prediction and analysis of immune dynamics. The project should provide benefits to industries where highly organised behaviours are important, for example those interested in robot swarming, optimal transportation, and epidemic management. It should also benefit Australian students and researchers with novel overseas training opportunities.Read moreRead less
ARC Centre of Excellence for the Mathematical Analysis of Cellular Systems. ARC Centre of Excellence for the Mathematical Analysis of Cellular Systems. The ARC Centre for the Mathematical Analysis of Cellular Systems aims to deliver the mathematics required to compute life. The Centre will deliver innovation in computational and mathematical biology and establish in silico biology alongside in vivo and in vitro biology. These models will allow us to understand the complexity of life at the cellu ....ARC Centre of Excellence for the Mathematical Analysis of Cellular Systems. ARC Centre of Excellence for the Mathematical Analysis of Cellular Systems. The ARC Centre for the Mathematical Analysis of Cellular Systems aims to deliver the mathematics required to compute life. The Centre will deliver innovation in computational and mathematical biology and establish in silico biology alongside in vivo and in vitro biology. These models will allow us to understand the complexity of life at the cellular level and enable new ways of combining diverse and heterogenous data. This will allow us to understand the mechanisms underlying cellular behaviour, and to apply rational design engineering methods in order to control the dynamics of biological systems. Read moreRead less
Discovery Early Career Researcher Award - Grant ID: DE240100097
Funder
Australian Research Council
Funding Amount
$389,670.00
Summary
Mathematical models for actin scavenging and biofilm removal. The project aims to develop mathematical models for actin scavenging and biofilm removal, processes that combine to alleviate tissue damage and inflammation. Actin scavenging eliminates the protein F-actin which is released during cell death, but this process is not fully-understood. Biofilms are colonies of micro-organisms, for example bacteria, that are highly resistant to antimicrobial treatment. This project expects to generate ne ....Mathematical models for actin scavenging and biofilm removal. The project aims to develop mathematical models for actin scavenging and biofilm removal, processes that combine to alleviate tissue damage and inflammation. Actin scavenging eliminates the protein F-actin which is released during cell death, but this process is not fully-understood. Biofilms are colonies of micro-organisms, for example bacteria, that are highly resistant to antimicrobial treatment. This project expects to generate new knowledge, using an innovative combination of mathematical modelling and cell biology experiments. Expected outcomes include new theory and software, yielding the benefits of increased understanding of cell biology, and potential to enhance development of smart materials that eliminate biofilms.Read moreRead less
Identifying how cortical bone microstructure deteriorates with age. This project aims to define the disruptions responsible for the gradual weakening of the skeleton in ageing by integrating a range of high-resolution imaging, biomechanical, and computational methods. The expected significance of this project includes a full definition and comparison of the cellular and subcellular organisation of bone from young and elderly individuals. Expected outcomes of this international project include th ....Identifying how cortical bone microstructure deteriorates with age. This project aims to define the disruptions responsible for the gradual weakening of the skeleton in ageing by integrating a range of high-resolution imaging, biomechanical, and computational methods. The expected significance of this project includes a full definition and comparison of the cellular and subcellular organisation of bone from young and elderly individuals. Expected outcomes of this international project include the establishment of a new multidisciplinary research team, and the development of a new data-driven theoretical framework for understanding the nature and the causes of age-related bone fragility. Potential long-term benefits include new ways to treat age-related osteoporosis.Read moreRead less
Understanding the mechanisms that inhibit and promote biofilm expansion. Yeasts have been used for biotechnology throughout recorded history. They are important human pathogens, and major experimental models of eukaryotic cells. Although yeasts are some of the most studied organisms in biology, their modes of colony biofilm formation are not fully understood. Methods to investigate the environmental and genetic processes that drive colony biofilm formation will be developed in this proposed pro .... Understanding the mechanisms that inhibit and promote biofilm expansion. Yeasts have been used for biotechnology throughout recorded history. They are important human pathogens, and major experimental models of eukaryotic cells. Although yeasts are some of the most studied organisms in biology, their modes of colony biofilm formation are not fully understood. Methods to investigate the environmental and genetic processes that drive colony biofilm formation will be developed in this proposed project. They will provide a deeper understanding of the mechanisms that inhibit and promote biofilm formation, and colonial morphology in the different modes of growth of Saccharomyces cerevisiae, with implications for this and other biofilm-forming yeasts of biotechnological or medical importance.Read moreRead less
CellMechBio: the influence of cellular mechanobiology on organ development. Through a set of collaborative interdisciplinary application projects, with open scientific questions, this project aims to develop cutting edge mechanobiological mathematical models of organ development and function.
The expected outcomes of this project are a step-change in the fidelity of multicellular models of three-dimensional tissues and the scientific investigations into the mechanobiological processes regulating ....CellMechBio: the influence of cellular mechanobiology on organ development. Through a set of collaborative interdisciplinary application projects, with open scientific questions, this project aims to develop cutting edge mechanobiological mathematical models of organ development and function.
The expected outcomes of this project are a step-change in the fidelity of multicellular models of three-dimensional tissues and the scientific investigations into the mechanobiological processes regulating organ development, currently not possible, that these models support.
In addition to significant benefits from advances in fundamental mathematical and biological knowledge, this project plans to develop a mechanobiological modelling framework made available to the wider scientific community by an open source release.Read moreRead less