Mathematical models and bioinformatic analyses of bacterial genome evolution. Bacteria are vital agents in earth's biosphere, breaking down and synthesising a wide variety of compounds. Some bacteria cause disease; others are exploited for a range of biotechnological applications. Bacteria have a remarkable ability to survive and thrive in changing conditions. For example, pathogenic bacteria confronted by antibiotics easily evolve resistance to them. With the reality of climate change, we expec ....Mathematical models and bioinformatic analyses of bacterial genome evolution. Bacteria are vital agents in earth's biosphere, breaking down and synthesising a wide variety of compounds. Some bacteria cause disease; others are exploited for a range of biotechnological applications. Bacteria have a remarkable ability to survive and thrive in changing conditions. For example, pathogenic bacteria confronted by antibiotics easily evolve resistance to them. With the reality of climate change, we expect more rapid shifts in the structure of bacterial communities, possibly leading to the emergence of new pathogens. The benefits of this project are to discover how the genetic structure of bacteria confer this flexibility, and to help keep Australia at the forefront of research in bioinformatics and mathematical biology.
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Understanding the T cell repertoire in health and disease. Immune recognition of viruses usually involves a large number of different 'killer T cells' that kill cells infected by virus. However, during prolonged infection or in the elderly the number of different killer T cells that recognise the virus is greatly reduced. This reduction in the diversity of the immune response allows the virus to avoid immune recognition, and leads to more severe infection. We aim to understand how diversity is ....Understanding the T cell repertoire in health and disease. Immune recognition of viruses usually involves a large number of different 'killer T cells' that kill cells infected by virus. However, during prolonged infection or in the elderly the number of different killer T cells that recognise the virus is greatly reduced. This reduction in the diversity of the immune response allows the virus to avoid immune recognition, and leads to more severe infection. We aim to understand how diversity is generated in the immune response, and how it becomes narrowed with age or prolonged infection. This information can be used to design vaccines for persistent infections such as HIV, and to improve immune control of infection in the elderly.Read moreRead less
Understanding the dynamics of T cell responses to chronic infection. The health, social, and economic impact of chronic infections on the Australian and global populations is enormous. A major obstacle to the development of vaccines against chronic infections is that we have a poor understanding of immune responses to persistent infections. We aim to use bioinformatics and mathematical modelling to understand immune responses to persistent viruses so that we can improve the long-term immune cont ....Understanding the dynamics of T cell responses to chronic infection. The health, social, and economic impact of chronic infections on the Australian and global populations is enormous. A major obstacle to the development of vaccines against chronic infections is that we have a poor understanding of immune responses to persistent infections. We aim to use bioinformatics and mathematical modelling to understand immune responses to persistent viruses so that we can improve the long-term immune control of chronic viral infections such as the human immunodeficiency virus (HIV). This project will strengthen Australian research in the area of interdisciplinary approaches to immunology, which is becoming crucial to interpreting the rapidly increasing volume of data obtained using advanced experimental techniques.Read moreRead less
Special Research Initiatives - Grant ID: SR0354592
Funder
Australian Research Council
Funding Amount
$20,000.00
Summary
Mathematical Biosciences Network. The network's aim is to stimulate the transfer of ideas, scientific insights, models and computational methods across the interface of mathematics and biology. Collaborative effort and training will occur to push forward the frontiers of biology and mathematics related to the fundamental problems of life, including how embryos develop, how diseases can be controlled, and how to describe and predict intra- and inter-cellular processes. A major theme of the netwo ....Mathematical Biosciences Network. The network's aim is to stimulate the transfer of ideas, scientific insights, models and computational methods across the interface of mathematics and biology. Collaborative effort and training will occur to push forward the frontiers of biology and mathematics related to the fundamental problems of life, including how embryos develop, how diseases can be controlled, and how to describe and predict intra- and inter-cellular processes. A major theme of the network is the transfer of information through an e-science grid allowing direct access to experimental data and model simulations.Read moreRead less
Using mathematical modelling to inform HIV/AIDS public health policy. This research will directly inform HIV/AIDS policy officials on the most effective strategies for preventing new cases in HIV in the community. Consequently, there are health benefits for Australia and for the other countries in which the research is being conducted. HIV/AIDS community groups, educators, and other advocacy groups will also be engaged in the research, leading to the development of focussed prevention campaigns ....Using mathematical modelling to inform HIV/AIDS public health policy. This research will directly inform HIV/AIDS policy officials on the most effective strategies for preventing new cases in HIV in the community. Consequently, there are health benefits for Australia and for the other countries in which the research is being conducted. HIV/AIDS community groups, educators, and other advocacy groups will also be engaged in the research, leading to the development of focussed prevention campaigns by these stakeholders to inform the appropriate communities. Reducing the health burdens of HIV/AIDS will also have economic benefits.Read moreRead less
New mathematical and statistical methods that inform the control of infectious disease outbreaks. Emerging infectious diseases are an ever-present threat to our community, as highlighted by the recent SARS epidemic and current fears concerning avian influenza. The research proposed by this project will help policy makers implement effective border control and outbreak control against a variety of emerging and re-emerging infectious diseases, including SARS, influenza and the deliberate release o ....New mathematical and statistical methods that inform the control of infectious disease outbreaks. Emerging infectious diseases are an ever-present threat to our community, as highlighted by the recent SARS epidemic and current fears concerning avian influenza. The research proposed by this project will help policy makers implement effective border control and outbreak control against a variety of emerging and re-emerging infectious diseases, including SARS, influenza and the deliberate release of an infectious disease such as smallpox. The project will enhance preparedness through a better understanding of the relative merits of different control strategies, and provide new methodology that can dynamically guide border and outbreak control in the midst of an outbreak by making effective use of data. Read moreRead less
New Directions in Non-linear Mathematical Asymptotics. Major challenges such as predicting epidemics or modelling cancer rely on our understanding of simple mathematical models with extremely complicated solutions. The first and only model in the literature to reproduce the three-phase cycle of immune response in HIV/AIDS was based on cellular automata. Its results are extremely sensitive to infinitesimally small changes in parameters. Yet, no technique exists to study such variation in cellular ....New Directions in Non-linear Mathematical Asymptotics. Major challenges such as predicting epidemics or modelling cancer rely on our understanding of simple mathematical models with extremely complicated solutions. The first and only model in the literature to reproduce the three-phase cycle of immune response in HIV/AIDS was based on cellular automata. Its results are extremely sensitive to infinitesimally small changes in parameters. Yet, no technique exists to study such variation in cellular automata. This research will provide new methods for prediction and analysis of such models. Read moreRead less
Modelling disease evolution and emergence. Approximately 75% of all emergent diseases have established in humans having switched from other species: Human Immunodeficiency Virus (HIV), Malaria, SARS (Severe Acute Respiratory Syndrome), Ebola, West Nile Virus and many more. Further, cross species infections put our biodiversity and economy at risk: plant and animal diseases entering Australia can destroy crops and at-risk native species. This project will provide for the first time the statistica ....Modelling disease evolution and emergence. Approximately 75% of all emergent diseases have established in humans having switched from other species: Human Immunodeficiency Virus (HIV), Malaria, SARS (Severe Acute Respiratory Syndrome), Ebola, West Nile Virus and many more. Further, cross species infections put our biodiversity and economy at risk: plant and animal diseases entering Australia can destroy crops and at-risk native species. This project will provide for the first time the statistical framework for scientists to assess risk of such diseases entering Australia as a key to combating them.Read moreRead less
Can an anti-HIV gene in blood stem cells protect from immune depletion by HIV? Approximately 15,000 individuals in Australia are currently HIV infected. Gene therapy has the capacity to remove antiretroviral treatment related issues, dramatically decrease treatment costs and simplify treatment of HIV.
In this study we will model a new approach to treat HIV in which the patient's own cells are used as the therapy by incorporating an anti-HIV gene. These cells are then re-introduced into the p ....Can an anti-HIV gene in blood stem cells protect from immune depletion by HIV? Approximately 15,000 individuals in Australia are currently HIV infected. Gene therapy has the capacity to remove antiretroviral treatment related issues, dramatically decrease treatment costs and simplify treatment of HIV.
In this study we will model a new approach to treat HIV in which the patient's own cells are used as the therapy by incorporating an anti-HIV gene. These cells are then re-introduced into the patient.
The strong mathematical focus of this project, and its application to a promising approach against HIV, will place Australia at the forefront of the mathematics of gene research and contribute to the National Priority Area of Promoting and Maintaining Good Health and the Priority Goal of Preventative Healthcare.
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T cell recognition and control of virus: the balance between T cell receptor diversity and degeneracy. T cells provide an important line of defence in the immune system's resistance against infectious diseases. However, changes to the T cell population during prolonged infection, and with age, can compromise the immune system's ability to fight effectively viral infections. The proposed research will greatly improve our understanding of the recognition and control of viral infections by T cells. ....T cell recognition and control of virus: the balance between T cell receptor diversity and degeneracy. T cells provide an important line of defence in the immune system's resistance against infectious diseases. However, changes to the T cell population during prolonged infection, and with age, can compromise the immune system's ability to fight effectively viral infections. The proposed research will greatly improve our understanding of the recognition and control of viral infections by T cells. The insights gained from this research will enable us to exploit key features of T cell responses to improve the outcome of viral infections in elderly individuals and to develop better vaccines for protection against a range of infectious diseases that affect the Australian population, including HIV and Hepatitis C.Read moreRead less