Advances in Sequential Monte Carlo Methods for Complex Bayesian Models. This project aims to develop efficient statistical algorithms for parameter estimation of complex stochastic models that currently cannot be handled. Parameter estimation is an essential component of mathematical modelling for answering scientific questions and revealing new insights. Current parameter estimation methods can be inefficient and require too much user intervention. This project will develop novel Bayesian alg ....Advances in Sequential Monte Carlo Methods for Complex Bayesian Models. This project aims to develop efficient statistical algorithms for parameter estimation of complex stochastic models that currently cannot be handled. Parameter estimation is an essential component of mathematical modelling for answering scientific questions and revealing new insights. Current parameter estimation methods can be inefficient and require too much user intervention. This project will develop novel Bayesian algorithms that are optimally automated and efficient by exploiting ever-improving parallel computing devices. The new methods will allow practitioners to process realistic models, enabling new scientific discoveries in a wide range of disciplines such as biology, ecology, agriculture, hydrology and finance.Read moreRead less
Precision ecology: the modern era of designed experiments in plant ecology. This project aims to develop the field of precision ecology, forging a new era of designed experiments where sampling is informed by research questions and what is known about the ecological process being studied. Through the development of novel statistical methods, new experiments globally will be designed to answer important ecological questions including what influence abiotic and biotic factors have on plant commun ....Precision ecology: the modern era of designed experiments in plant ecology. This project aims to develop the field of precision ecology, forging a new era of designed experiments where sampling is informed by research questions and what is known about the ecological process being studied. Through the development of novel statistical methods, new experiments globally will be designed to answer important ecological questions including what influence abiotic and biotic factors have on plant communities over time and different spatial scales. Expected outcomes include new methods and tools that will modernise how future experiments will be conducted in plant ecology. This will provide significant transdisciplinary benefits including new statistical methods that target scientific discovery in ecological studies.Read moreRead less
Generalised Degrees of Freedom and Probabilistic Regularisation. This project intends to develop novel statistical tools for more accurate prediction by taking account of model complexity and uncertainties associated with the fitting procedure. The project also plans to develop a novel shrinkage approach via new penalty functions to avoid over-fitting and asymptotic properties. The key applications may include genetic studies where the number of predictors is large and biological experiments whe ....Generalised Degrees of Freedom and Probabilistic Regularisation. This project intends to develop novel statistical tools for more accurate prediction by taking account of model complexity and uncertainties associated with the fitting procedure. The project also plans to develop a novel shrinkage approach via new penalty functions to avoid over-fitting and asymptotic properties. The key applications may include genetic studies where the number of predictors is large and biological experiments where multivariate and temporal data are often collected – for example economical breeding in animal and fish farming and more effectively detecting the genes of interest in genetic studies on human, animals and plants.Read moreRead less
Leaves in 3D: photosynthesis and water-use efficiency. This project aims to develop leaf anatomical ideotypes with improved photosynthesis and water-use efficiency for wheat, rice, chickpea and cotton using novel three dimensional imaging and modelling techniques. This project expects to generate new understanding of the role of leaf anatomy on leaf function. Expected outcomes of this project include the world's first 3D spatially-explicit, anatomically accurate model of leaves of crop plants to ....Leaves in 3D: photosynthesis and water-use efficiency. This project aims to develop leaf anatomical ideotypes with improved photosynthesis and water-use efficiency for wheat, rice, chickpea and cotton using novel three dimensional imaging and modelling techniques. This project expects to generate new understanding of the role of leaf anatomy on leaf function. Expected outcomes of this project include the world's first 3D spatially-explicit, anatomically accurate model of leaves of crop plants to allow virtual experiments identifying optimized anatomy for improved photosynthetic performance. Benefits to the agricultural industry include increased crop productivity and water-use efficiency to meet future global food demand and to make the most of Australia's limited water resourcesRead moreRead less
Principled statistical methods for high-dimensional correlation networks. This project aims to develop a novel and principled approach for building correlation networks. Correlation networks aim to identify the most significant associations present in modern massive datasets, and have numerous applications, ranging from the biomedical and environmental sciences to the social sciences. Nodes of such networks represent features, and edges represent associations, or the lack thereof. Current method ....Principled statistical methods for high-dimensional correlation networks. This project aims to develop a novel and principled approach for building correlation networks. Correlation networks aim to identify the most significant associations present in modern massive datasets, and have numerous applications, ranging from the biomedical and environmental sciences to the social sciences. Nodes of such networks represent features, and edges represent associations, or the lack thereof. Current methods are not readily scalable to modern ultra-high dimensional settings, and do not account for uncertainty in the estimated associations. This project will develop a principled, highly scalable methodology for building such networks, which incorporates uncertainty quantification. Emphasis is placed on modern ultra-high dimensional settings in which differentiating a true correlation from a spurious one is a notoriously difficult task.Read moreRead less
New methods for modelling real-world extremes. This project aims to develop new theory and methods for analysing and predicting extreme values observed in real-world processes. Many existing techniques are limited by convenient mathematical assumptions that commonly do not hold in practice: dependence at asymptotic levels, process stationarity, and that the observed data are direct measurements of the process of interest. As a result, using these techniques may produce undesirable results. Expec ....New methods for modelling real-world extremes. This project aims to develop new theory and methods for analysing and predicting extreme values observed in real-world processes. Many existing techniques are limited by convenient mathematical assumptions that commonly do not hold in practice: dependence at asymptotic levels, process stationarity, and that the observed data are direct measurements of the process of interest. As a result, using these techniques may produce undesirable results. Expected outcomes of this project include theoretically justified data analysis techniques that can accurately model extreme values seen in the real world. Project benefits include more realistic analyses of nationally important applications in climate, bushfire insurance risk, and anomaly detection.Read moreRead less
Optimising progress towards elimination of malaria. The project aims to advance mathematical knowledge by developing novel tools appropriate for modelling disease elimination. We will apply these new mathematical tools to the significant problem of malaria elimination in Vietnam. The expected outcomes are new tools for modelling disease elimination on a fine spatial resolution with heterogeneities in individual patient characteristics, calibrating models to household level data on disease transm ....Optimising progress towards elimination of malaria. The project aims to advance mathematical knowledge by developing novel tools appropriate for modelling disease elimination. We will apply these new mathematical tools to the significant problem of malaria elimination in Vietnam. The expected outcomes are new tools for modelling disease elimination on a fine spatial resolution with heterogeneities in individual patient characteristics, calibrating models to household level data on disease transmission and designing intervention strategies for maximum effect on disease transmission. The innovative combination of modelling, inference and optimisation ensures that the mathematical methods developed will be broadly applicable to modelling elimination strategies for other infectious diseases.
Read moreRead less
Innovative statistical methods for analysing high-dimensional counts. The aim is to develop fast, modern statistical methods for analysing high dimensional data in ecology at large scales, in particular, for visualising, classifying and predicting ecological communities. The benefit of the project is a set of multivariate tools that can be used to better understand biodiversity and its response to environmental drivers, a challenging statistical problem. The proposed methods for analysing high d ....Innovative statistical methods for analysing high-dimensional counts. The aim is to develop fast, modern statistical methods for analysing high dimensional data in ecology at large scales, in particular, for visualising, classifying and predicting ecological communities. The benefit of the project is a set of multivariate tools that can be used to better understand biodiversity and its response to environmental drivers, a challenging statistical problem. The proposed methods for analysing high dimensional data can provide insight into large scale questions in ecology, such as automated identification of biogeographic boundaries. The expected outcome is a powerful statistical toolset for model-based analysis of high dimensional data, introducing modern multivariate approaches to a high-impact area of ecology.Read moreRead less
Novel statistical methods for data with non-Euclidean geometric structure. This project aims to develop new flexible regression models and classification algorithms, along with robust and efficient inference methods, applicable to a wide range of non-Euclidean data types which arise in many fields of science, business and technology. There are serious flaws with currently available methods of analysis for non-Euclidean data. This project expects to transform such analyses by providing new quanti ....Novel statistical methods for data with non-Euclidean geometric structure. This project aims to develop new flexible regression models and classification algorithms, along with robust and efficient inference methods, applicable to a wide range of non-Euclidean data types which arise in many fields of science, business and technology. There are serious flaws with currently available methods of analysis for non-Euclidean data. This project expects to transform such analyses by providing new quantitative tools within a unifying framework. The anticipated project outcomes will be of mathematical interest and valuable in applications such as finance (predicting Australian stock returns); modelling electroencephalography data; Australian geochemical data, relating to sediments; and Australian X-ray tumour image data. Read moreRead less
Fast flexible feature selection for high dimensional challenging data. The project aims to provide new frameworks for fast flexible feature selection and appropriate modelling of heterogeneous data through structural varying-coefficient regression models. The outcomes will be a series of new statistical methods and concepts enabling more powerful modelling of complex bioscience data. The project will create the science for building reliable statistical models taking model uncertainty into accoun ....Fast flexible feature selection for high dimensional challenging data. The project aims to provide new frameworks for fast flexible feature selection and appropriate modelling of heterogeneous data through structural varying-coefficient regression models. The outcomes will be a series of new statistical methods and concepts enabling more powerful modelling of complex bioscience data. The project will create the science for building reliable statistical models taking model uncertainty into account, impacting how results will be interpreted, and with accompanying software. This will be a significant improvement in the assessment of model confidence in the food and health research priority areas including areas such as meat science, Huntington’s disease, and kidney transplantation.Read moreRead less